Browse Element(s) Details


Os.56006.1.S1_at

Description gb:AK109116.1
DB_XREF= gi:32994325
TID=Os.56006.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56006 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-155-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-155-C07, full insert sequence.
FL= gb:AK109116.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0861011/11Transferase family protein, expressed
LOC_Os02g048801/11hypothetical protein
LOC_Os04g427841/11DNA mismatch repair MutS family, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08560OsAffx.15313.1.S1_s_at11/116+4248414..4263340ABC transporter family protein, putative, expressed
LOC_Os06g08560Os.30059.2.S1_x_at2/116+4248414..4263340ABC transporter family protein, putative, expressed
LOC_Os06g08570OsAffx.15314.1.S1_at11/116+4265481..4267140pentatricopeptide, putative, expressed
LOC_Os06g08580Os.15299.1.S1_at11/116+4267970..4269615Transferase family protein, expressed
LOC_Os06g08580Os.15299.1.S1_x_at11/116+4267970..4269615Transferase family protein, expressed
LOC_Os06g08590OsAffx.27512.1.S1_at11/116+4270135..4271242hypothetical protein
LOC_Os06g08600NANA6+4275275..4276141NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g08610Os.56006.1.S1_at11/116+4285709..4286860Transferase family protein, expressed
LOC_Os06g08620Os.55265.1.S1_at9/116+4287385..4287951hypothetical protein
LOC_Os06g08630OsAffx.19542.3.S1_x_at10/116+4289192..4293413retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g08640OsAffx.27513.1.S1_s_at11/116+4300561..4302106Transferase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000002biological_processmitochondrial genome maintenance
GO:0006298biological_processmismatch repair
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0003684molecular_functiondamaged DNA binding
GO:0005524molecular_functionATP binding
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56006.1.S1_at--302--4711Chr06:4286615..4286639 (25 bp)
GCTGCCGCCGGACAAGGCAAACCTA
LOC_Os06g08610
Os.56006.1.S1_at--1005--5131Chr06:4286631..4286655 (25 bp)
GCAAACCTATTCCTTCTCTATAAGT
LOC_Os06g08610
Os.56006.1.S1_at--1060--10571Chr06:4286644..4286668 (25 bp)
TTCTCTATAAGTACATCTCCGAAGA
LOC_Os06g08610
Os.56006.1.S1_at--1141--2071Chr06:4286656..4286680 (25 bp)
ACATCTCCGAAGATTGGGTCGACAT
LOC_Os06g08610
Os.56006.1.S1_at--682--7691Chr06:4286671..4286695 (25 bp)
GGGTCGACATACAACTTAATATTCA
LOC_Os06g08610
Os.56006.1.S1_at--803--7931Chr06:4286702..4286726 (25 bp)
GGATAATTGCATCTATGCCCCTACT
LOC_Os06g08610
Os.56006.1.S1_at--1060--592Chr06:4286716..4286740 (25 bp)
ATGCCCCTACTTTGAAAGCCAATTG
LOC_Os06g08610
Os.56006.1.S1_at--706--8995Chr06:4286788..4286812 (25 bp)
TGAATCTGAACCAGCCGTCTACCCT
LOC_Os06g08610
Os.56006.1.S1_at--327--1656Chr06:4286800..4286824 (25 bp)
AGCCGTCTACCCTCACTTGTGACAG
LOC_Os06g08610
Os.56006.1.S1_at--449--3752Chr12:2543624..2543644 (21 bp)
CTCACTTGTGACAGCCGTTTGGTAG
NONE
Os.56006.1.S1_at--858--5612Chr09:4778969..4778988 (20 bp)
GACAGCCGTTTGGTAGGTCCCACGT
NONE
Target Sequence 
GCTGCCGCCGGACAAGGCAAACCTATTCCTTCTCTATAAGTACATCTCCGAAGATTGGGTCGACATACAACTTAATATTC
AACAAAGGGATAATTGCATCTATGCCCCTACTTTGAAAGCCAATTGCTGTTTTACCCCCACTTTTTAGGGTTTGCAGTTT
TACCCCTATTTTTTGAATCTGAACCAGCCGTCTACCCTCACTTGTGACAGCCGTTTGGTAGGTCCCACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56006.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis