Browse Element(s) Details


Os.56055.1.S1_at

Description gb:AK109182.1
DB_XREF= gi:32994391
TID=Os.56055.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56055 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-156-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-156-A05, full insert sequence.
FL= gb:AK109182.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g432409/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43180Os.6501.1.A1_at11/118+27174069..27176594expressed protein
LOC_Os08g43190Os.10128.1.S1_at11/118+27183096..27185620oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os08g43200OsAffx.6121.1.S1_at11/118+27187835..27188545AP2 domain containing protein
LOC_Os08g43210OsAffx.29642.1.S1_at11/118+27191681..27192436AP2 domain containing protein
LOC_Os08g43220OsAffx.6122.1.S1_at11/118+27193776..27195847F-box domain containing protein
LOC_Os08g43230OsAffx.17491.1.S1_at11/118+27196599..27198435TraB protein, putative, expressed
LOC_Os08g43240Os.56055.1.S1_at9/118+27200027..27200786expressed protein
LOC_Os08g43250OsAffx.17492.1.S1_at11/118+27212451..27214207MATE efflux family protein, expressed
LOC_Os08g43260OsAffx.17493.1.S1_at11/118+27219829..27220859hypothetical protein
LOC_Os08g43270NANA8+27224572..27225566BAG domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56055.1.S1_at--901--931Chr08:27200649..27200673 (25 bp)
AGGAACTCGACACCGAAACCTGCGA
LOC_Os08g43240
Os.56055.1.S1_at--38--7251Chr08:27200623..27200647 (25 bp)
GTCGCCAAGCTGTCGGCCGAGATTG
LOC_Os08g43240
Os.56055.1.S1_at--431--6611Chr08:27200603..27200627 (25 bp)
GATTGGCACCTACTGCGAATTCGAC
LOC_Os08g43240
Os.56055.1.S1_at--545--2771Chr08:27200464..27200488 (25 bp)
AAGACCGGGATCACTTTCAGAGAGT
LOC_Os08g43240
Os.56055.1.S1_at--655--51Chr08:27200425..27200449 (25 bp)
ATTGATTGTGGTGGTCTGCAGCCCA
LOC_Os08g43240
Os.56055.1.S1_at--1111--1291Chr08:27200251..27200275 (25 bp)
AGATGGTAGGCACACTTCCAGGTCC
LOC_Os08g43240
Os.56055.1.S1_at--187--9231Chr08:27200235..27200259 (25 bp)
TCCAGGTCCAGGCAAGATCAGCGGT
LOC_Os08g43240
Os.56055.1.S1_at--145--2171Chr08:27200206..27200230 (25 bp)
ACACCACCAACGTCGGAGTCATCTT
LOC_Os08g43240
Os.56055.1.S1_at--3--711NONE
ATGAGGCCAGCCATTATCGTCAATA
NONE
Os.56055.1.S1_at--566--6751Chr08:27200090..27200114 (25 bp)
GTTAATTTAGTGTTATTGCCGGCTA
LOC_Os08g43240
Os.56055.1.S1_at--596--51Chr08:27200026..27200050 (25 bp)
ATTGCAGTGCATTACATCGTTTTGT
NONE
Target Sequence 
AGGAACTCGACACCGAAACCTGCGACGTCGCCAAGCTGTCGGCCGAGATTGGCACCTACTGCGAATTCGACCAAGGGAGG
ATGTACCCCGGCCGGTGCTGCGACAGCATCATCGACGCCGCGGATGGGCACGATGGCGGTGGCACTCAGTGCATCTGCCG
CGTCTGGATGGAGGATGCGGTGAGAAAGACCGGGATCACTTTCAGAGAGTTGTTGCATAAGTACATTGATTGTGGTGGTC
TGCAGCCCAGCCTACCTCATCTTGCCGACTCCGCTTGCTCAGCTGCTCCTGAGATGGTAGGCACACTTCCAGGTCCAGGC
AAGATCAGCGGTGCAGACACCACCAACGTCGGAGTCATCTTCTCCGCCATGAGGCCAGCCATTATCGTCAATAAAATGCT
AGCTAGTACTTGATACATATATATAGCGAGTGTTCGTTGGGGTATTTGTTAAGTTAATTTAGTGTTATTGCCGGCTAATA
ATATATATAGTAGAGAAGCTATGAGTTTGATGTCATATTGCAGTGCATTACATCGTTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56055.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis