Browse Element(s) Details


Os.56086.1.S1_at

Description gb:AK109236.1
DB_XREF= gi:32994445
TID=Os.56086.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56086 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-156-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-156-F08, full insert sequence.
FL= gb:AK109236.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g308801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30850Os.9393.1.S1_a_at10/1110+15755079..15757298RNA-binding protein, putative, expressed
LOC_Os10g30860Os.17895.1.S1_a_at11/1110+15763382..15767033expressed protein
LOC_Os10g30860Os.17895.2.S1_x_at10/1110+15763382..15767033expressed protein
LOC_Os10g30870Os.18850.1.S1_at11/1110+15767192..15769159expressed protein
LOC_Os10g30870OsAffx.27220.1.S1_at1/1110+15767192..15769159expressed protein
LOC_Os10g30880Os.30124.1.S1_at11/1110+15776905..15777987expressed protein
LOC_Os10g30880Os.30124.1.S1_x_at11/1110+15776905..15777987expressed protein
LOC_Os10g30880Os.56086.1.S1_at1/1110+15776905..15777987expressed protein
LOC_Os10g30890Os.14361.1.S1_at10/1110+15780621..15782714expressed protein
LOC_Os10g30900OsAffx.6826.1.S1_at11/1110+15785551..15785936hypothetical protein
LOC_Os10g30910Os.6001.1.S1_at11/1110+15791881..15801528transmembrane protein, putative, expressed
LOC_Os10g30910Os.6001.2.S1_at1/1110+15791881..15801528transmembrane protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56086.1.S1_at--100--1271Chr10:15776860..15776884 (25 bp)
AGATCAGCGAGCGAGTTAGTGAGCT
NONE
Os.56086.1.S1_at--67--1211Chr10:15776873..15776897 (25 bp)
AGTTAGTGAGCTGTGAGCCGCCAGA
NONE
Os.56086.1.S1_at--693--6771Chr10:15776874..15776898 (25 bp)
GTTAGTGAGCTGTGAGCCGCCAGAT
NONE
Os.56086.1.S1_at--267--10451Chr10:15776875..15776899 (25 bp)
TTAGTGAGCTGTGAGCCGCCAGATC
NONE
Os.56086.1.S1_at--546--10071Chr10:15776876..15776900 (25 bp)
TAGTGAGCTGTGAGCCGCCAGATCG
NONE
Os.56086.1.S1_at--832--8671Chr10:15776884..15776908 (25 bp)
TGTGAGCCGCCAGATCGGGCCATGA
NONE
Os.56086.1.S1_at--273--3431Chr10:15776894..15776918 (25 bp)
CAGATCGGGCCATGAGGATCCGCAA
NONE
Os.56086.1.S1_at--742--1271Chr10:15776895..15776919 (25 bp)
AGATCGGGCCATGAGGATCCGCAAG
NONE
Os.56086.1.S1_at--593--6591Chr10:15777952..15777976 (25 bp)
GATTGAACCGAGGTAAAATGGCAAA
LOC_Os10g30880
Os.56086.1.S1_at--898--3131Chr10:15777978..15778002 (25 bp)
AATTTTGGCCATATGCCCTGTTCCT
NONE
Os.56086.1.S1_at--1119--10391Chr10:15777980..15778004 (25 bp)
TTTTGGCCATATGCCCTGTTCCTTC
NONE
Target Sequence 
AGATCAGCGAGCGAGTTAGTGAGCTGTGAGCCGCCAGATCGGGCCATGAGGATCCGCAAGCGCACGCCGGTCAGGGCCGC
CTCGCCGTCGCCGGGACCGTCGCCGCAGCCAAAGGAAGATCCCGCCGCCGCGGCAAAGGCAGAGGACGACGACGGCGTGG
AGGAAGAGGAGGAGTCCAAGAACCACGGCGCTAACCTCCGGTGCAACGACGACGACGACGACGAGGAGTTCCACTACTAC
GGCGGGTTACAGCACGGCGGCAGGAAGCGGGCGAAGAGCGGCGGCGGCGGTGGGCCGGCGTGAAAGCTCTGCTTCCCCGC
CGGCGGCTACGTCATTGATTCTTCGCACCAGCGTTTGCATTGCGTTGCGTCGATCGATCGATCACACACTACGGTTTCAG
AGTAGCAGAGCTCACTGTAGCTAACCCCAGACAAATTCAGAGGCAAAAAATGCCATGAAACATTTTGGTTGAAAAATCTT
GGACCAGATGCACAAGTAGGAAAGATGGATTGAACCGAGGTAAAATGGCAAATAATTTTGGCCATATGCCCTGTTCCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56086.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis