Browse Element(s) Details


Os.56090.1.S1_at

Description gb:AK109244.1
DB_XREF= gi:32994453
TID=Os.56090.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56090 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-156-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-156-G05, full insert sequence.
FL= gb:AK109244.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1975011/11Uncharacterised protein family containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19710Os.23381.1.A1_at6/119+11795029..11797947hypersensitive-induced response protein, putative, expressed
LOC_Os09g19720Os.57110.1.S1_at11/119+11798225..11799570expressed protein
LOC_Os09g19734Os.3441.1.S1_s_at11/119+11804588..11814324isochorismate synthases family protein, expressed
LOC_Os09g19734Os.3441.1.S1_at11/119+11804588..11814324isochorismate synthases family protein, expressed
LOC_Os09g19734Os.6334.1.S1_at11/119+11804588..11814324isochorismate synthases family protein, expressed
LOC_Os09g19734Os.39720.1.A1_x_at3/119+11804588..11814324isochorismate synthases family protein, expressed
LOC_Os09g19750Os.51582.1.S2_at11/119+11817541..11820424Uncharacterised protein family containing protein, expressed
LOC_Os09g19750Os.56090.1.S1_at11/119+11817541..11820424Uncharacterised protein family containing protein, expressed
LOC_Os09g19750OsAffx.29926.1.S1_s_at11/119+11817541..11820424Uncharacterised protein family containing protein, expressed
LOC_Os09g19750Os.51582.1.S1_at10/119+11817541..11820424Uncharacterised protein family containing protein, expressed
LOC_Os09g19750OsAffx.29926.1.S1_at7/119+11817541..11820424Uncharacterised protein family containing protein, expressed
LOC_Os09g19760OsAffx.29927.1.S1_at11/119+11825690..11825929hypothetical protein
LOC_Os09g19769NANA9+11829099..11829284NA
LOC_Os09g19780NANA9+11836068..11836760hypothetical protein
LOC_Os09g19790Os.14152.1.S1_at11/119+11842719..11850258Peptidase family M1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56090.1.S1_at--100--391Chr09:11820054..11820078 (25 bp)
ATCACTGATTTATTACCGATCCCCT
LOC_Os09g19750
Os.56090.1.S1_at--665--4051Chr09:11820038..11820062 (25 bp)
CGATCCCCTCAATTTGTTGCAAAGA
LOC_Os09g19750
Os.56090.1.S1_at--725--5031Chr09:11820020..11820044 (25 bp)
GCAAAGACGACTGCCCTAGGGATTG
LOC_Os09g19750
Os.56090.1.S1_at--31--10091Chr09:11820004..11820028 (25 bp)
TAGGGATTGCTCTTGTGTTTTCGCA
LOC_Os09g19750
Os.56090.1.S1_at--23--3051Chr09:11819930..11819954 (25 bp)
AATCGAGTTGTTTTCTAGTGTGTTG
LOC_Os09g19750
Os.56090.1.S1_at--882--10071Chr09:11819915..11819939 (25 bp)
TAGTGTGTTGGTTGCTAGATCAAGT
LOC_Os09g19750
Os.56090.1.S1_at--244--5251Chr09:11819832..11819856 (25 bp)
GAATCATCTGATTTGGAGCTCCTAG
LOC_Os09g19750
Os.56090.1.S1_at--117--10851Chr09:11819820..11819844 (25 bp)
TTGGAGCTCCTAGTTAGACCTCTGT
LOC_Os09g19750
Os.56090.1.S1_at--372--1391Chr09:11819805..11819829 (25 bp)
AGACCTCTGTCTGTTTGTTGGTCAT
LOC_Os09g19750
Os.56090.1.S1_at--365--9631Chr09:11819784..11819808 (25 bp)
TCATGATTCAGGCTAGGCGGCGCAT
LOC_Os09g19750
Os.56090.1.S1_at--393--611Chr09:11819761..11819785 (25 bp)
ATGCGCTGCGCTGGCCTGTTGAATT
LOC_Os09g19750
Target Sequence 
ATCACTGATTTATTACCGATCCCCTCAATTTGTTGCAAAGACGACTGCCCTAGGGATTGCTCTTGTGTTTTCGCAGTTTA
GGATGGGGTTTCATTTAAGTAGGTTTTTAGTTTATATGGCAAGAAATCGAGTTGTTTTCTAGTGTGTTGGTTGCTAGATC
AAGTTGATAAAGTGGCTTATGTAATGGTGATGGCTAAAGCCTAAAGGGGATTCTTCTTTGAAGAATCATCTGATTTGGAG
CTCCTAGTTAGACCTCTGTCTGTTTGTTGGTCATGATTCAGGCTAGGCGGCGCATGCGCTGCGCTGGCCTGTTGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56090.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis