Browse Element(s) Details


Os.56106.1.S1_at

Description gb:AK109266.1
DB_XREF= gi:32994475
TID=Os.56106.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56106 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-185-B07, full insert sequence.
FL= gb:AK109266.1 gb:AK110845.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4510011/11Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45070Os.8293.1.S1_at11/112+27324306..27335863PINHEAD protein, putative, expressed
LOC_Os02g45080OsAffx.12501.1.S1_at11/112+27341534..27344352myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os02g45090Os.9264.1.S1_at11/112+27346205..27351144expressed protein
LOC_Os02g45100Os.56106.1.S1_at11/112+27351722..27353791Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os02g45100Os.56106.1.S2_at11/112+27351722..27353791Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os02g45110Os.20898.1.S1_at11/112+27354548..27359890N6-adenosine-methyltransferase MT-A70, putative, expressed
LOC_Os02g45120Os.9917.1.S1_s_at11/112+27363273..27365942Transcription factor S-II family protein, expressed
LOC_Os02g45120Os.26438.1.S1_at10/112+27363273..27365942Transcription factor S-II family protein, expressed
LOC_Os02g45130Os.18183.1.S1_at11/112+27366205..27370892protein kinase family protein, putative, expressed
LOC_Os02g45140OsAffx.2962.1.S1_at10/112+27372081..27373796hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006626biological_processprotein targeting to mitochondrion
GO:0015031biological_processprotein transport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005744cellular_componentmitochondrial inner membrane presequence translocase complex
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56106.1.S1_at--817--9431Chr02:27353359..27353383 (25 bp)
TCGGCAACCGGTTCGGCATCGTCGC
LOC_Os02g45100
Os.56106.1.S1_at--1154--9331Chr02:27353338..27353362 (25 bp)
TCGCGATGCTCTTCGCCGGGACCGA
LOC_Os02g45100
Os.56106.1.S1_at--1050--9291Chr02:27353120..27353144 (25 bp)
TCCGCCAGATTGGATTATTTACGCT
LOC_Os02g45100
Os.56106.1.S1_at--385--3131Chr02:27353089..27353113 (25 bp)
AATTTCAGGCTGAATTACTACTCAA
LOC_Os02g45100
Os.56106.1.S1_at--28--9911Chr02:27353074..27353098 (25 bp)
TACTACTCAACATGGTGTGCGCCTG
LOC_Os02g45100
Os.56106.1.S1_at--673--7731Chr02:27353061..27353085 (25 bp)
GGTGTGCGCCTGGAGAAGTTTTTAT
LOC_Os02g45100
Os.56106.1.S1_at--784--5331Chr02:27353047..27353071 (25 bp)
GAAGTTTTTATTCGTAGTATCTAGC
LOC_Os02g45100
Os.56106.1.S1_at--59--6911Chr02:27353031..27353055 (25 bp)
GTATCTAGCTAGCAACTCTGATCTC
LOC_Os02g45100
Os.56106.1.S1_at--1115--5131Chr02:27353020..27353044 (25 bp)
GCAACTCTGATCTCAATTAATAGTT
LOC_Os02g45100
Os.56106.1.S1_at--80--2571Chr02:27352992..27353016 (25 bp)
AACTGTTCATATTTGGTGTCCTGCA
LOC_Os02g45100
Os.56106.1.S1_at--367--10211Chr02:27352981..27353005 (25 bp)
TTTGGTGTCCTGCAAATTAATGGAC
LOC_Os02g45100
Target Sequence 
TCGGCAACCGGTTCGGCATCGTCGCGATGCTCTTCGCCGGGACCGAGAGCTTCGTCCGCGACCAGCGCGACGGCGCCGAC
GACTGGGTCAACACCGTCGCCGCGGGGGCCAGCGCCGGGGCGCTCTACCGCATCGCGTCCGGCCCAAGGTCGATGATCGT
CGCCGGCATCCTCGGCGGAGTCCTGTCCGGCGCAGCTGTCGCGGGTAAGCCGATGCTTCAGAGATTCGCGCCGAAGCTAT
CCGCCAGATTGGATTATTTACGCTGAGTAAAATTTCAGGCTGAATTACTACTCAACATGGTGTGCGCCTGGAGAAGTTTT
TATTCGTAGTATCTAGCTAGCAACTCTGATCTCAATTAATAGTTTGTAACTGTTCATATTTGGTGTCCTGCAAATTAATG
GAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56106.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis