Browse Element(s) Details


Os.56112.1.A1_at

Description gb:AK109274.1
DB_XREF= gi:32994483
TID=Os.56112.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56112 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-188-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-188-A10, full insert sequence.
FL= gb:AK109274.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4377411/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43710Os.6452.1.S1_at11/111+25372041..25376261Cytochrome P450 72A1, putative, expressed
LOC_Os01g43710Os.6452.2.A1_a_at11/111+25372041..25376261Cytochrome P450 72A1, putative, expressed
LOC_Os01g43720Os.770.1.S1_at11/111+25382651..25384933Cytochrome P450 72A1, putative, expressed
LOC_Os01g43729OsAffx.21330.1.S1_at11/111+25385567..25386223NA
LOC_Os01g43740Os.33102.1.S1_at11/111+25387612..25390410Cytochrome P450 family protein, expressed
LOC_Os01g43740Os.33102.2.S1_at11/111+25387612..25390410Cytochrome P450 family protein, expressed
LOC_Os01g43750Os.773.1.S1_s_at11/111+25393101..25395128Cytochrome P450 family protein, expressed
LOC_Os01g43760Os.21332.1.S1_at9/111+25397564..25399553Cytochrome P450 family protein, expressed
LOC_Os01g43760Os.26891.1.A1_x_at1/111+25397564..25399553Cytochrome P450 family protein, expressed
LOC_Os01g43774Os.41199.1.A1_at11/111+25400697..25405220Cytochrome P450 family protein, expressed
LOC_Os01g43774Os.56112.1.A1_at11/111+25400697..25405220Cytochrome P450 family protein, expressed
LOC_Os01g43774OsAffx.23650.1.S1_at9/111+25400697..25405220Cytochrome P450 family protein, expressed
LOC_Os01g43790NANA1+25421128..25421442transposon protein, putative, unclassified
LOC_Os01g43800NANA1+25427849..25433238retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56112.1.A1_at--57--2911Chr01:25403815..25403839 (25 bp)
AAGGTACATCACGTGAAAGCGTCTC
LOC_Os01g43774
Os.56112.1.A1_at--282--7371Chr01:25403827..25403851 (25 bp)
GTGAAAGCGTCTCACTCGTACAGAC
LOC_Os01g43774
Os.56112.1.A1_at--927--7011Chr01:25403844..25403868 (25 bp)
GTACAGACGTACGTACGCTAGGTTG
LOC_Os01g43774
Os.56112.1.A1_at--992--1831Chr01:25403858..25403882 (25 bp)
ACGCTAGGTTGATCGTAGGATTGTA
LOC_Os01g43774
Os.56112.1.A1_at--518--611Chr01:25403888..25403912 (25 bp)
ATGCGGTATGGGTTGATTTGTAGCT
LOC_Os01g43774
Os.56112.1.A1_at--394--6651Chr01:25403899..25403923 (25 bp)
GTTGATTTGTAGCTCATGCTGCCGG
LOC_Os01g43774
Os.56112.1.A1_at--172--10651Chr01:25404143..25404167 (25 bp)
TTCCGGGTTACATGTGAGCAACAAA
LOC_Os01g43774
Os.56112.1.A1_at--89--2251Chr01:25404165..25404189 (25 bp)
AAATTCCATGGTCCCCTCGGGCATA
LOC_Os01g43774
Os.56112.1.A1_at--699--3751Chr01:25404180..25404204 (25 bp)
CTCGGGCATACTCTGTTTAACTCTG
LOC_Os01g43774
Os.56112.1.A1_at--295--331Chr01:25404187..25404211 (25 bp)
ATACTCTGTTTAACTCTGCTGTTAC
LOC_Os01g43774
Os.56112.1.A1_at--38--9131Chr01:25404203..25404227 (25 bp)
TGCTGTTACAGCAGGCTACATTTTG
LOC_Os01g43774
Target Sequence 
AAGGTACATCACGTGAAAGCGTCTCACTCGTACAGACGTACGTACGCTAGGTTGATCGTAGGATTGTATAGTAATGCGGT
ATGGGTTGATTTGTAGCTCATGCTGCCGGCGTTTTCTACGTGCTGTGAAGAGCTTGTCGGGAAATGGATGGATTCCCTTG
GTCCCGACGGTTCGTGCGAGCTGATGTTTGGCCGGAGATGCAGAGTCTCACCGGAGATGTCATCTCTCGCACGGCATTCG
GCAGCAGCTACAGTGAAGGAAGGAGGATCTTCCAGCTGCAGACTGAGCAAGCTGAGCTCTTCATAGGAGCCATTCAGAAG
TTCGTCATTCCGGGTTACATGTGAGCAACAAATTCCATGGTCCCCTCGGGCATACTCTGTTTAACTCTGCTGTTACAGCA
GGCTACATTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56112.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis