Browse Element(s) Details


Os.56121.1.S1_x_at

Description gb:AK109290.1
DB_XREF= gi:32994499
TID=Os.56121.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56121 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-188-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-188-C09, full insert sequence.
FL= gb:AK109290.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4088011/11Nucleotide-binding protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40850Os.15236.1.S1_at11/114+24021826..2402467526S proteasome non-ATPase regulatory subunit 6, putative, expressed
LOC_Os04g40860Os.12079.1.S1_at11/114+24024851..24028652transposon protein, putative, unclassified, expressed
LOC_Os04g40870Os.35089.1.S1_at11/114+24034237..24038366expressed protein
LOC_Os04g40880Os.373.1.S1_s_at11/114+24048790..24051074Nucleotide-binding protein 1, putative, expressed
LOC_Os04g40880Os.56121.1.S1_x_at11/114+24048790..24051074Nucleotide-binding protein 1, putative, expressed
LOC_Os04g40890OsAffx.29207.2.S1_at11/114+24053443..24053817hypothetical protein
LOC_Os04g40890OsAffx.29207.1.S1_x_at3/114+24053443..24053817hypothetical protein
LOC_Os04g40900Os.27605.1.S1_at5/114+24057495..24059304expressed protein
LOC_Os04g40910Os.22667.1.S1_at11/114+24060506..24064172F-box domain containing protein, expressed
LOC_Os04g40910Os.52534.1.S1_x_at5/114+24060506..24064172F-box domain containing protein, expressed
LOC_Os04g40910OsAffx.16986.1.S1_at4/114+24060506..24064172F-box domain containing protein, expressed
LOC_Os04g40920Os.51645.1.S1_at11/114+24074963..24076626expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56121.1.S1_x_at--21--791Chr04:24050651..24050675 (25 bp)
ATGTGATGCTTTGCTCCGCGGCGTG
LOC_Os04g40880
Os.56121.1.S1_x_at--678--7211Chr04:24050627..24050651 (25 bp)
GTCGCTTCGATGCTTGGTTTAGTTT
LOC_Os04g40880
Os.56121.1.S1_x_at--109--10131Chr04:24050551..24050575 (25 bp)
TATGAGCATCCTTTTGCAGAGCCTC
LOC_Os04g40880
Os.56121.1.S1_x_at--237--3431Chr04:24050535..24050559 (25 bp)
CAGAGCCTCGTGTCAGTTGTGTGCA
LOC_Os04g40880
Os.56121.1.S1_x_at--216--6871Chr04:24050498..24050522 (25 bp)
GTTTGGTAGTCGGTAGCTCATCTAT
LOC_Os04g40880
Os.56121.1.S1_x_at--891--10011Chr04:24050474..24050498 (25 bp)
TAGCAAAGTCGCATGCTTCCAGCAT
LOC_Os04g40880
Os.56121.1.S1_x_at--1151--671Chr04:24050336..24050360 (25 bp)
ATGAGCTCTCCGACAAATTCCTATT
LOC_Os04g40880
Os.56121.1.S1_x_at--261--2251Chr04:24050322..24050346 (25 bp)
AAATTCCTATTTGTTGGCCCATCAA
LOC_Os04g40880
Os.56121.1.S1_x_at--572--8411Chr04:24050307..24050331 (25 bp)
GGCCCATCAAAGTTGGTTCCTTTAT
LOC_Os04g40880
Os.56121.1.S1_x_at--69--5491Chr04:24050241..24050265 (25 bp)
GAACATCTGCATTCCAAGTCAATTT
LOC_Os04g40880
Os.56121.1.S1_x_at--1108--7351Chr04:24050122..24050146 (25 bp)
GTGAACCACTGTTTATGAACCTTAA
LOC_Os04g40880
Target Sequence 
ATGTGATGCTTTGCTCCGCGGCGTGTCGCTTCGATGCTTGGTTTAGTTTGGTTTTACTGCAATCGAGTGTGAATTTAGTG
GAGCATACAGCCTATGCTTGTATGAGCATCCTTTTGCAGAGCCTCGTGTCAGTTGTGTGCAGGAAATTTCAGAGTTTGGT
AGTCGGTAGCTCATCTATAGCAAAGTCGCATGCTTCCAGCATGTATAAGTTTCTGTAGTATAACTGGCTGTGGCATTGAT
GAATTTGAAGAAGTTTAGATTGTGTGAGCTATGAAAAGAAAAAAAAAACAGTCCGGTGTGAAGTATGCAAAGAACATGAG
CTCTCCGACAAATTCCTATTTGTTGGCCCATCAAAGTTGGTTCCTTTATTTCTGAAGATTATGAACTGTTGCAACCATGG
ATGTATATTGGAACATCTGCATTCCAAGTCAATTTGATCAATGGATAGAAGTTCTCTAGTTCTTAAATGATCAAGTGCTT
AGAAGAACTTATAATCGCACTTAAGATTTTCCATATATCTACATGTTAAGTGAACCACTGTTTATGAACCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56121.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis