Browse Element(s) Details


Os.56129.1.S1_at

Description gb:AK109306.1
DB_XREF= gi:32994515
TID=Os.56129.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56129 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-188-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-188-E05, full insert sequence.
FL= gb:AK109306.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4636011/11pectinesterase inhibitor domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46320Os.50868.1.S1_at11/112+28227792..28231342ALG6, ALG8 glycosyltransferase family protein, expressed
LOC_Os02g46330OsAffx.12519.1.S1_at11/112+28234927..28235334hypothetical protein
LOC_Os02g46340OsAffx.12520.1.S1_s_at11/112+28240566..28241814Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g46350Os.10552.1.S1_at11/112+28246640..28251018cell division cycle protein, putative, expressed
LOC_Os02g46360Os.56129.1.S1_at11/112+28252408..28253495pectinesterase inhibitor domain containing protein
LOC_Os02g46370OsAffx.2978.1.S1_at11/112+28255716..28258232hypothetical protein
LOC_Os02g46380Os.34151.1.S2_a_at11/112+28260700..28263757purine permease family protein, putative, expressed
LOC_Os02g46380Os.34151.1.S1_a_at11/112+28260700..28263757purine permease family protein, putative, expressed
LOC_Os02g46390OsAffx.12522.1.S1_at11/112+28264888..28265991hypothetical protein
LOC_Os02g46400OsAffx.24753.1.S1_at11/112+28266351..28266884expressed protein
LOC_Os02g46410OsAffx.2979.1.S1_at11/112+28267529..28268254hypothetical protein
LOC_Os02g46420Os.11599.1.S1_at11/112+28272454..28274001transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0046910molecular_functionpectinesterase inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56129.1.S1_at--117--9371Chr02:28253082..28253106 (25 bp)
TCGACACCGGCAACCATGGATTGAT
LOC_Os02g46360
Os.56129.1.S1_at--572--3051Chr02:28253117..28253141 (25 bp)
AATCATCGTGATTCGCGCATAATTA
LOC_Os02g46360
Os.56129.1.S1_at--870--4971Chr02:28253150..28253174 (25 bp)
GCATCGTGGACTACATTCAGCTATA
LOC_Os02g46360
Os.56129.1.S1_at--639--2911Chr02:28253222..28253246 (25 bp)
AAGGATTTTGTCCAGTGCCTTGCAT
LOC_Os02g46360
Os.56129.1.S1_at--834--3511Chr02:28253244..28253268 (25 bp)
CATGTTACGCATGCAACGTGGTTTA
LOC_Os02g46360
Os.56129.1.S1_at--1051--10851Chr02:28253286..28253310 (25 bp)
TTGGAATCTCATCTCGCGCTTTTTT
LOC_Os02g46360
Os.56129.1.S1_at--917--9891Chr02:28253313..28253337 (25 bp)
TACTCCGTACGTGGTATGTCTTTGA
LOC_Os02g46360
Os.56129.1.S1_at--203--751Chr02:28253328..28253352 (25 bp)
ATGTCTTTGAACGTGGGTGCTAGCT
LOC_Os02g46360
Os.56129.1.S1_at--927--8611Chr02:28253341..28253365 (25 bp)
TGGGTGCTAGCTGTTTTCTGGAAGT
LOC_Os02g46360
Os.56129.1.S1_at--64--5391Chr02:28253380..28253404 (25 bp)
GAAGCAAGGCGTGCTGCCTTCTGAA
LOC_Os02g46360
Os.56129.1.S1_at--1085--9311Chr02:28253430..28253454 (25 bp)
TCCCTTCTTTTCTATGTGGCTTGTT
LOC_Os02g46360
Target Sequence 
TCGACACCGGCAACCATGGATTGATACTGTCTATTAATCATCGTGATTCGCGCATAATTAGAAATTTAGCATCGTGGACT
ACATTCAGCTATAATAAAAGATTTTTCGATGATATGTTAAATTTTTTATGCTTTACTTGGAAGGATTTTGTCCAGTGCCT
TGCATGTTACGCATGCAACGTGGTTTAGTGGGCGAGTAGCCAGCTTGGAATCTCATCTCGCGCTTTTTTTATACTCCGTA
CGTGGTATGTCTTTGAACGTGGGTGCTAGCTGTTTTCTGGAAGTGGGAGCGTTGAGTGGAAGCAAGGCGTGCTGCCTTCT
GAACAGCACCTTTGCCTTTCGCCTTCGCTCCCTTCTTTTCTATGTGGCTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56129.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis