Browse Element(s) Details


Os.56192.1.S1_at

Description gb:AK109583.1
DB_XREF= gi:32994792
TID=Os.56192.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56192 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-A08, full insert sequence.
FL= gb:AK109583.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4517011/11serine/threonine-protein kinase RLCKVII, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45120OsAffx.26469.2.S1_at11/114+26463554..26464878Serpin family protein
LOC_Os04g45120OsAffx.26469.2.S1_x_at11/114+26463554..26464878Serpin family protein
LOC_Os04g45130OsAffx.14273.1.S1_at11/114+26465542..26466563heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os04g45140Os.26579.1.S1_at11/114+26470776..26473578expressed protein
LOC_Os04g45160OsAffx.14274.1.A1_at11/114+26476543..26481414expressed protein
LOC_Os04g45160Os.50910.1.S1_at11/114+26476543..26481414expressed protein
LOC_Os04g45160Os.50910.2.S1_x_at9/114+26476543..26481414expressed protein
LOC_Os04g45170OsAffx.26672.1.S1_x_at11/114+26487650..26489451serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os04g45170Os.56192.1.S1_at11/114+26487650..26489451serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os04g45180Os.52243.1.S1_at11/114+26490184..26493410EF hand family protein, expressed
LOC_Os04g45190Os.11087.1.A1_at11/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45190OsAffx.26470.1.S1_x_at6/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45190OsAffx.26470.1.S1_at4/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45190Os.24612.1.A1_at1/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45200Os.54567.1.S1_at11/114+26497361..26500426expressed protein
LOC_Os04g45200Os.54567.1.S1_x_at10/114+26497361..26500426expressed protein
LOC_Os04g45200OsAffx.26470.1.S1_at5/114+26497361..26500426expressed protein
LOC_Os04g45200OsAffx.26470.1.S1_x_at3/114+26497361..26500426expressed protein
LOC_Os04g45200Os.56488.1.S1_at1/114+26497361..26500426expressed protein
LOC_Os04g45210Os.49185.1.S1_at11/114+26500992..26501945Peroxisomal biogenesis factor 11 family protein, expressed
LOC_Os04g45220OsAffx.26471.1.S1_at11/114+26502932..26503540hypothetical protein
LOC_Os04g45230OsAffx.4096.1.S1_at11/114+26506311..26506652hypothetical protein
LOC_Os04g45240Os.23271.2.A1_x_at1/114+26508238..26517894expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56192.1.S1_at--197--91Chr04:26489202..26489226 (25 bp)
ATTGCCATCTCGTAGTCGTAGACGG
LOC_Os04g45170
Os.56192.1.S1_at--806--9391Chr04:26489217..26489241 (25 bp)
TCGTAGACGGACATGCAATTTGCTG
LOC_Os04g45170
Os.56192.1.S1_at--1035--5191Chr04:26489231..26489255 (25 bp)
GCAATTTGCTGCTACTCGGACAGTA
LOC_Os04g45170
Os.56192.1.S1_at--653--5651Chr04:26489249..26489273 (25 bp)
GACAGTAACTACAGAGACGCACACA
LOC_Os04g45170
Os.56192.1.S1_at--967--5991Chr04:26489262..26489286 (25 bp)
GAGACGCACACAGTGGTTTTGCCAC
LOC_Os04g45170
Os.56192.1.S1_at--685--10311Chr04:26489310..26489334 (25 bp)
TTTCTTTTTGATTCGTGGCTACTGC
LOC_Os04g45170
Os.56192.1.S1_at--412--8831Chr04:26489318..26489342 (25 bp)
TGATTCGTGGCTACTGCTTTACGTT
LOC_Os04g45170
Os.56192.1.S1_at--1098--9071Chr04:26489332..26489356 (25 bp)
TGCTTTACGTTTCCTCGGTGCCTTT
LOC_Os04g45170
Os.56192.1.S1_at--730--7471Chr04:26489390..26489414 (25 bp)
GTGTGGATATTTTGTGAGCGGATTT
LOC_Os04g45170
Os.56192.1.S1_at--558--5891Chr04:26489405..26489429 (25 bp)
GAGCGGATTTGATGTGTGATATGTC
LOC_Os04g45170
Os.56192.1.S1_at--687--751Chr04:26489425..26489449 (25 bp)
ATGTCATATGTGATCTACCCAGGAT
LOC_Os04g45170
Target Sequence 
ATTGCCATCTCGTAGTCGTAGACGGACATGCAATTTGCTGCTACTCGGACAGTAACTACAGAGACGCACACAGTGGTTTT
GCCACAAAGGGCTTTTTAACCTTTTTTTTTCTTTTTGATTCGTGGCTACTGCTTTACGTTTCCTCGGTGCCTTTTTGCCT
CTCCCTCTCCCAGATCACATGAAAAATGTGTGGATATTTTGTGAGCGGATTTGATGTGTGATATGTCATATGTGATCTAC
CCAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56192.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis