Browse Element(s) Details


Os.5620.2.S1_s_at

Description gb:NM_183545.1
DB_XREF= gi:34894217
GEN=P0439B06.30
TID=Os.5620.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.5620 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0439B06.30 (P0439B06.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0439B06.30 (P0439B06.30), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0218010/11expressed protein
LOC_Os05g013205/11expressed protein
LOC_Os01g028701/11nodulin MtN21 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02120Os.29115.1.S1_at11/111+609366..612433MOTHER of FT and TF1 protein, putative, expressed
LOC_Os01g02130Os.30376.1.S1_at11/111+617374..618318expressed protein
LOC_Os01g02140NANA1+620870..621289expressed protein
LOC_Os01g02150Os.1653.1.S1_at11/111+622788..623811expressed protein
LOC_Os01g02160OsAffx.350.1.S1_s_at11/111+628895..629715expressed protein
LOC_Os01g02170Os.33335.1.S1_at11/111+630813..636111expressed protein
LOC_Os01g02170Os.53043.1.S1_x_at11/111+630813..636111expressed protein
LOC_Os01g02170Os.53043.1.S1_at11/111+630813..636111expressed protein
LOC_Os01g02170Os.53712.1.S1_x_at1/111+630813..636111expressed protein
LOC_Os01g02180Os.37685.1.A1_at11/111+637399..641069expressed protein
LOC_Os01g02180Os.5620.2.S1_s_at10/111+637399..641069expressed protein
LOC_Os01g02190Os.31744.1.S1_at10/111+642417..643524Major intrinsic protein, expressed
LOC_Os01g02200Os.1660.1.S1_at11/111+644940..648683armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os01g02200Os.54720.1.S1_at1/111+644940..648683armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os01g02210NANA1+659085..661374retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g02220NANA1+661579..664356retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g02230NANA1+664849..667778retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5620.2.S1_s_at--45--7671Chr01:638808..638832 (25 bp)
GGGATCTTAGTGCTTTCCAAGAGGA
LOC_Os01g02180
Os.5620.2.S1_s_at--994--9791NONE
TAACCTTGTAGTTCGGAGTCTGGAA
NONE
Os.5620.2.S1_s_at--216--7191Chr01:638641..638661 (21 bp)
GTCTGGAATCAAAGCTCGTGAGTCT
LOC_Os01g02180
Os.5620.2.S1_s_at--1005--1551Chr01:638629..638653 (25 bp)
AGCTCGTGAGTCTGGAATACACCCA
LOC_Os01g02180
Os.5620.2.S1_s_at--1129--6692Chr05:180940..180964 (25 bp)
GTTCCTCCAGCTATTGGATCTTCAG
LOC_Os05g01320
Os.5620.2.S1_s_at--30--8571Chr01:638270..638294 (25 bp)
TGGATCTTCAGAGCTAGTTGTTAGG
LOC_Os01g02180
Os.5620.2.S1_s_at--170--8772Chr05:180823..180932 (25 bp)
TGTTAGGAGGGTTTCTTCGTTGCCT
LOC_Os05g01320
Os.5620.2.S1_s_at--357--10632Chr05:180808..180832 (25 bp)
TTCGTTGCCTCAATCTACTGCTCTT
LOC_Os05g01320
Os.5620.2.S1_s_at--1101--5052Chr05:180759..180783 (25 bp)
GCAGCTGAACCATCACCTAGGGCAG
LOC_Os05g01320
Os.5620.2.S1_s_at--816--7951Chr01:637925..637949 (25 bp)
GGATCAGGTCGTTTTCAGGAGCAGC
LOC_Os01g02180
Os.5620.2.S1_s_at--380--2973Chr01:1008038..1008057 (20 bp)
AATGGAGCCTCATCCTCAACTGGAG
LOC_Os01g02870
Target Sequence 
GGGATCTTAGTGCTTTCCAAGAGGATTTACAATCAGTTAACCTTGTAGTTCGGAGTCTGGAATCAAAGCTCGTGAGTCTG
GAATACACCCAGGTCCCAGCAGCATCCGTTCCTCCAGCTATTGGATCTTCAGAGCTAGTTGTTAGGAGGGTTTCTTCGTT
GCCTCAATCTACTGCTCTTCCAGTTCTGCCGACAACCACACCTGCAGCTGAACCATCACCTAGGGCAGAGGCACCACAGG
AGGAACAGTGGGGTTTTGTGAGCAGAACATCATCTTGTAGGGAAGGATCAGGTCGTTTTCAGGAGCAGCGGAGTGTTGTG
ACCAGAACGTCGTCTATTAGGGAAGGATCTCCTGAATCTTCAAATGGAGCCTCATCCTCAACTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5620.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis