Browse Element(s) Details


Os.56214.1.S1_at

Description gb:AK109624.1
DB_XREF= gi:32994833
TID=Os.56214.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56214 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-138-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-138-B07, full insert sequence.
FL= gb:AK109624.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0926010/11Cytokinin dehydrogenase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09246Os.12093.1.S1_at11/111+4670209..4681569glycine-rich protein, putative, expressed
LOC_Os01g09246Os.12093.2.S1_x_at11/111+4670209..4681569glycine-rich protein, putative, expressed
LOC_Os01g09252Os.42888.1.S1_at11/111+4684973..4689916Myosin heavy chain kinase B, putative, expressed
LOC_Os01g09252Os.42888.2.S1_x_at10/111+4684973..4689916Myosin heavy chain kinase B, putative, expressed
LOC_Os01g09260OsAffx.9698.1.S1_x_at11/111+4694116..4696594Cytokinin dehydrogenase 1 precursor, putative, expressed
LOC_Os01g09260Os.56214.1.S1_at10/111+4694116..4696594Cytokinin dehydrogenase 1 precursor, putative, expressed
LOC_Os01g09270NANA1+4710325..4710726hypothetical protein
LOC_Os01g09280Os.3818.1.S1_a_at11/111+4711519..4715548myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g09290OsAffx.9696.1.S1_at7/111+4721172..4721561transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0046420
GO:0009823biological_processcytokinin catabolism
GO:0005773cellular_componentvacuole
GO:0008131molecular_functionamine oxidase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56214.1.S1_at--482--9191Chr01:4694486..4694510 (25 bp)
TCCAAGTAAACACAACACATTGACA
LOC_Os01g09260
Os.56214.1.S1_at--51--2211Chr01:4694475..4694499 (25 bp)
ACAACACATTGACATTATCGCCGAC
LOC_Os01g09260
Os.56214.1.S1_at--724--4511Chr01:4694456..4694480 (25 bp)
GCCGACATTGTCACTTTTCTCGAAG
LOC_Os01g09260
Os.56214.1.S1_at--985--1271Chr01:4694433..4694457 (25 bp)
AGATCATCATCGTCACGATGCACTG
LOC_Os01g09260
Os.56214.1.S1_at--313--3551Chr01:4694426..4694450 (25 bp)
CATCGTCACGATGCACTGTACAATA
LOC_Os01g09260
Os.56214.1.S1_at--530--511Chr01:4694425..4694449 (25 bp)
ATCGTCACGATGCACTGTACAATAT
LOC_Os01g09260
Os.56214.1.S1_at--1083--4011Chr01:4694423..4694447 (25 bp)
CGTCACGATGCACTGTACAATATGT
LOC_Os01g09260
Os.56214.1.S1_at--220--1891Chr01:4694419..4694443 (25 bp)
ACGATGCACTGTACAATATGTGGGT
LOC_Os01g09260
Os.56214.1.S1_at--777--3331Chr01:4694413..4694437 (25 bp)
CACTGTACAATATGTGGGTGGGTGT
LOC_Os01g09260
Os.56214.1.S1_at--21--7491Chr01:4694396..4694420 (25 bp)
GTGGGTGTAGGTGGGATGCGGCGAT
LOC_Os01g09260
Os.56214.1.S1_at--1081--5651Chr01:4694106..4694130 (25 bp)
GACATCTTCAACTGATTGATTAATT
NONE
Target Sequence 
TCCAAGTAAACACAACACATTGACATTATCGCCGACATTGTCACTTTTCTCGAAGATCATCATCGTCACGATGCACTGTA
CAATATGTGGGTGGGTGTAGGTGGGATGCGGCGATGTCGGCGGTGACGCCGGAGGGGGAGGAGGAGGTGTTCTACGTGGT
GTCGCTGCTGTTCTCGGCGGTGGCGAACGACGTGGCGGCGCTGGAGGCGCAGAACAGGAGGATACTGAGGTTCTGCGACC
TCGCCGGGATCGGGTACAAGGCGTACCTGGCGCACTACGACAGCCGCGGCGACTGGGTGAGGCATTTTGGCGCCAAATGG
GATCGCTTCGTGCAGAGGAAGGACAAGTACGACCCCAAGAAGCTGCTCTCCCCTGGCCAGGACATCTTCAACTGATTGAT
TAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56214.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis