Browse Element(s) Details


Os.56250.1.S1_at

Description gb:AK109691.1
DB_XREF= gi:32994900
TID=Os.56250.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56250 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-E06, full insert sequence.
FL= gb:AK109691.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1555011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15480Os.14294.1.S1_at11/119+9475481..9477841Ser/Thr-rich protein T10 in DGCR region, putative, expressed
LOC_Os09g15490NANA9+9482798..9483515hypothetical protein
LOC_Os09g15500OsAffx.29854.1.S1_x_at7/119+9485054..9486123Peroxidase family protein
LOC_Os09g15500OsAffx.29854.1.S1_at6/119+9485054..9486123Peroxidase family protein
LOC_Os09g15500Os.28000.1.A1_x_at4/119+9485054..9486123Peroxidase family protein
LOC_Os09g15510OsAffx.29854.1.S1_x_at11/119+9489520..9491543Peroxidase family protein, expressed
LOC_Os09g15510OsAffx.29854.1.S1_at11/119+9489520..9491543Peroxidase family protein, expressed
LOC_Os09g15510Os.28000.1.A1_x_at4/119+9489520..9491543Peroxidase family protein, expressed
LOC_Os09g15520Os.6617.1.S1_s_at11/119+9495345..9496052Oleosin family protein, expressed
LOC_Os09g15530OsAffx.29855.1.S1_at11/119+9496190..9497538hypothetical protein
LOC_Os09g15540Os.56211.1.S1_at11/119+9497903..9499492F-box domain containing protein, expressed
LOC_Os09g15540OsAffx.9167.1.S1_x_at1/119+9497903..9499492F-box domain containing protein, expressed
LOC_Os09g15550Os.56250.1.S1_at11/119+9500360..9501868F-box domain containing protein, expressed
LOC_Os09g15560Os.55706.1.S1_at11/119+9504693..9506076F-box domain containing protein, expressed
LOC_Os09g15570OsAffx.29856.1.S1_at11/119+9510313..9512124F-box domain containing protein, expressed
LOC_Os09g15580OsAffx.30126.2.S1_at11/119+9513235..9516346hypothetical protein
LOC_Os09g15580OsAffx.30126.2.S1_x_at10/119+9513235..9516346hypothetical protein
LOC_Os09g15580Os.16896.1.S1_at5/119+9513235..9516346hypothetical protein
LOC_Os09g15580Os.36979.1.S1_x_at3/119+9513235..9516346hypothetical protein
LOC_Os09g15590OsAffx.30125.1.S1_at11/119+9517483..9523582F-box domain containing protein, expressed
LOC_Os09g15590OsAffx.8513.1.S1_s_at1/119+9517483..9523582F-box domain containing protein, expressed
LOC_Os09g15600OsAffx.13016.2.S1_at10/119+9525904..9527944transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56250.1.S1_at--528--8451Chr09:9501318..9501342 (25 bp)
TGGCCACCATGCGATTCTCGATCGA
LOC_Os09g15550
Os.56250.1.S1_at--388--9391Chr09:9501335..9501359 (25 bp)
TCGATCGACATGTTCCCGGAGACCA
LOC_Os09g15550
Os.56250.1.S1_at--926--5831Chr09:9501355..9501379 (25 bp)
GACCATCCGGGCGTCGTACGACAAA
LOC_Os09g15550
Os.56250.1.S1_at--333--2191Chr09:9501375..9501399 (25 bp)
ACAAATGGACCTTCCGGGTCATCGA
LOC_Os09g15550
Os.56250.1.S1_at--532--9411Chr09:9501420..9501444 (25 bp)
TCGTCCGCGTGATGCGCAACGACCT
LOC_Os09g15550
Os.56250.1.S1_at--247--4871Chr09:9501493..9501517 (25 bp)
GCTAGTGAGCCTGCCGGAGGCCACA
LOC_Os09g15550
Os.56250.1.S1_at--778--5011Chr09:9501534..9501558 (25 bp)
GCAGGGAGACGTACTTCCGGCAAGA
LOC_Os09g15550
Os.56250.1.S1_at--842--1811Chr09:9501681..9501705 (25 bp)
ACGCCGGAGCGGCTTACTCGTACGA
LOC_Os09g15550
Os.56250.1.S1_at--981--10471Chr09:9501694..9501718 (25 bp)
TTACTCGTACGAGCTGCCTTGGCCG
LOC_Os09g15550
Os.56250.1.S1_at--471--5811Chr09:9501762..9501786 (25 bp)
GACGCCGTTGAGCTGTGTAAAATTA
LOC_Os09g15550
Os.56250.1.S1_at--1062--10391Chr09:9501784..9501808 (25 bp)
TTATACTCCCTTTCTACTCGTAAAG
LOC_Os09g15550
Target Sequence 
TGGCCACCATGCGATTCTCGATCGACATGTTCCCGGAGACCATCCGGGCGTCGTACGACAAATGGACCTTCCGGGTCATC
GACGGCGGCTACGCTCTCCGCGTCGTCCGCGTGATGCGCAACGACCTCAAGGTGTTCGCGCAGCTCGCCGGCAGCGGCGA
GTGGGTGGTGGAGAGGCTAGTGAGCCTGCCGGAGGCCACACGCGAGCTGCCGGGGCGCAGGGAGACGTACTTCCGGCAAG
AAGCCAAGATCGTCGCGGCGAACGCGGCGTACGTCCTCCTGACGCCGCAGGAGAAGAAGAGGTGGCTCTTCTCCGTGGAG
CTCGAGACGGGGAAGGTGGAGCGCCGCCATGAGAGGAACAGGTACGCCGGAGCGGCTTACTCGTACGAGCTGCCTTGGCC
GCCGGCGTTGCAGGCTTGTGCGGATTACGGTGGTGGGAGACGGCGACGCCGTTGAGCTGTGTAAAATTATACTCCCTTTC
TACTCGTAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56250.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis