Browse Element(s) Details


Os.56257.1.S1_at

Description gb:AK109702.1
DB_XREF= gi:32994911
TID=Os.56257.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56257 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-F08, full insert sequence.
FL= gb:AK109702.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4675011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46720Os.4058.1.S1_at10/115+26960087..26965297phosphatidylinositol transfer-like protein III, putative, expressed
LOC_Os05g46730OsAffx.4643.1.S1_at11/115+26968340..26970191hypothetical protein
LOC_Os05g46740Os.24693.1.A1_s_at11/115+26974115..26980331regulator of chromosome condensation, putative, expressed
LOC_Os05g46750Os.56257.1.S1_at11/115+26984094..26986744Protein kinase domain containing protein, expressed
LOC_Os05g46760Os.6085.1.S1_at11/115+26992676..26994094Protein kinase domain containing protein, expressed
LOC_Os05g46770Os.49992.1.S1_at11/115+27001961..27005810expressed protein
LOC_Os05g46770Os.49992.1.S1_s_at11/115+27001961..27005810expressed protein
LOC_Os05g46770Os.53970.1.S1_at10/115+27001961..27005810expressed protein
LOC_Os05g46780Os.12959.1.S1_at11/115+27010298..27015753transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g46780OsAffx.15132.1.S1_at7/115+27010298..27015753transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56257.1.S1_at--226--1371Chr05:26985801..26985825 (25 bp)
AGAGCACGCTGGATGCCGCATTTTG
LOC_Os05g46750
Os.56257.1.S1_at--338--3831Chr05:26985696..26985720 (25 bp)
CTGCCGTGCCGGATTGGGAATCAGA
LOC_Os05g46750
Os.56257.1.S1_at--872--3411Chr05:26985675..26985699 (25 bp)
CAGACGATGGCTGGATCGACGTCAT
LOC_Os05g46750
Os.56257.1.S1_at--651--7111Chr05:26985655..26985679 (25 bp)
GTCATGAGCAGCCAATCCGAACTTC
LOC_Os05g46750
Os.56257.1.S1_at--533--1511Chr05:26985603..26985627 (25 bp)
AGCAGACGCGCAGCGAAGTTTCTGA
LOC_Os05g46750
Os.56257.1.S1_at--480--2831Chr05:26985588..26985612 (25 bp)
AAGTTTCTGAATCGCCGGTGGCTTC
LOC_Os05g46750
Os.56257.1.S1_at--861--8731Chr05:26985509..26985533 (25 bp)
TGTAATGGATGCTGACGTGGACGAT
LOC_Os05g46750
Os.56257.1.S1_at--278--6291Chr05:26985481..26985505 (25 bp)
GATGATGAGCTCGTGCACAATGTAC
LOC_Os05g46750
Os.56257.1.S1_at--758--1851Chr05:26985458..26985482 (25 bp)
ACGAACTGTTGATACCTTTGTGGAT
LOC_Os05g46750
Os.56257.1.S1_at--886--5491Chr05:26985433..26985457 (25 bp)
GAACAGCTCCGCCAAGATATTTATT
LOC_Os05g46750
Os.56257.1.S1_at--638--10071Chr05:26985395..26985419 (25 bp)
TAGTGACCCAATTGTACTTCATGTT
LOC_Os05g46750
Target Sequence 
AGAGCACGCTGGATGCCGCATTTTGGGAGTCGGACGCCGACGACGAGGACGACGACATGCCGGAGAGCTGGGCCGAGAGG
ATCATGGCGCTGGCCGTCCCCTGCTCTGCCGTGCCGGATTGGGAATCAGACGATGGCTGGATCGACGTCATGAGCAGCCA
ATCCGAACTTCCCATCGCGGCGGCTGAAACGCCGGCCGAGCAGACGCGCAGCGAAGTTTCTGAATCGCCGGTGGCTTCGC
CGGCTTTGGAGACGACGAGCTACGCGAGTGCTTGGGATGAAAGATCGGAAGCTGTAATGGATGCTGACGTGGACGATGAC
GATGATGAGCTCGTGCACAATGTACGAACTGTTGATACCTTTGTGGATGAACAGCTCCGCCAAGATATTTATTTAGATTT
TACTACTAGTGACCCAATTGTACTTCATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56257.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis