Browse Element(s) Details


Os.56259.1.S1_at

Description gb:AK109705.1
DB_XREF= gi:32994914
TID=Os.56259.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56259 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-G04, full insert sequence.
FL= gb:AK109705.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1864011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18580OsAffx.30582.1.S1_s_at10/112+10836766..10837275hypothetical protein
LOC_Os02g18590Os.55650.1.A1_at7/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590OsAffx.22385.1.S1_x_at7/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590OsAffx.21756.5.A1_x_at5/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590Os.52979.1.S1_at4/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590OsAffx.20329.1.S1_at2/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590Os.22646.1.S1_x_at1/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590OsAffx.22143.1.S1_at1/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18600OsAffx.11549.1.S1_at1/112+10846039..10848189transposon protein, putative, unclassified
LOC_Os02g18600OsAffx.31811.4.S1_at1/112+10846039..10848189transposon protein, putative, unclassified
LOC_Os02g18610OsAffx.12103.1.S1_at11/112+10849474..10850435hypothetical protein
LOC_Os02g18610OsAffx.26471.1.S1_at1/112+10849474..10850435hypothetical protein
LOC_Os02g18620OsAffx.24310.1.S1_at11/112+10854612..10855586hypothetical protein
LOC_Os02g18630Os.54656.1.S1_at11/112+10857584..10859010F-box domain containing protein, expressed
LOC_Os02g18640Os.56259.1.S1_at11/112+10861340..10862860F-box domain containing protein, expressed
LOC_Os02g18650Os.54891.1.S1_at11/112+10864067..10867220Pectinesterase-2 precursor, putative, expressed
LOC_Os02g18660Os.6598.1.S1_at11/112+10870288..10874504expressed protein
LOC_Os02g18670OsAffx.2672.1.S1_at11/112+10880661..10886276ABC transporter family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56259.1.S1_at--1079--8151Chr02:10861970..10861994 (25 bp)
GGAAACATTGAGCTGCTACGCGCAG
LOC_Os02g18640
Os.56259.1.S1_at--80--911Chr02:10861947..10861971 (25 bp)
AGGCGATTCCGGCTTATATCTCATC
LOC_Os02g18640
Os.56259.1.S1_at--66--6471Chr02:10861844..10861868 (25 bp)
GATAACATCTGCTTGGGCGAATCGT
LOC_Os02g18640
Os.56259.1.S1_at--592--7111Chr02:10861816..10861840 (25 bp)
GTCAGTTTGCAGAGCCCAATTGGGA
LOC_Os02g18640
Os.56259.1.S1_at--802--3191Chr02:10861752..10861776 (25 bp)
CAATGCTGAGGTGTTCTTGCGGGTA
LOC_Os02g18640
Os.56259.1.S1_at--540--7691Chr02:10861732..10861756 (25 bp)
GGGTAGACCGTGTGATCTTCCACAT
LOC_Os02g18640
Os.56259.1.S1_at--540--6431Chr02:10861577..10861601 (25 bp)
GATCAGTGATCCTCGAAGGCGCATT
LOC_Os02g18640
Os.56259.1.S1_at--1107--8371Chr02:10861560..10861584 (25 bp)
GGCGCATTTGTCTGGTGCCTTGCAA
LOC_Os02g18640
Os.56259.1.S1_at--1111--7271Chr02:10861546..10861570 (25 bp)
GTGCCTTGCAAGTATGGTCCTGAAT
LOC_Os02g18640
Os.56259.1.S1_at--1150--7131Chr02:10861519..10861543 (25 bp)
GTCTTGTAGATCTCTCACTGCTAGA
LOC_Os02g18640
Os.56259.1.S1_at--482--10471Chr02:10861420..10861444 (25 bp)
TTACCTGATGCTATCTTTGTCTGCT
LOC_Os02g18640
Target Sequence 
GGAAACATTGAGCTGCTACGCGCAGGCGATTCCGGCTTATATCTCATCCATCTGAAGGGGTTTCAGATTCATGTTTGGTT
CCGCGCCTCCGATTCCGACATCGGTGGTGGCAACTGGGAGCTGGTTGATAACATCTGCTTGGGCGAATCGTTTGGTCAGT
TTGCAGAGCCCAATTGGGAATCAGGGGATGCTCTGGTTGCGCTCCATAGGGTGGAGGACAATGCTGAGGTGTTCTTGCGG
GTAGACCGTGTGATCTTCCACATACATATCATGAACAGGACGGTAAACAAAGTGTTTGAGATGTCACCAGAGGCTTATAG
ATATTTTGACATATTTCCATTCATGATGCTCTGGCCTCCCACCTTCCCACAACTTAGGAATGATCATGATCAAGATCAGT
GATCCTCGAAGGCGCATTTGTCTGGTGCCTTGCAAGTATGGTCCTGAATTTGTCTTGTAGATCTCTCACTGCTAGAATCT
GCTTATGTTATGTATCTCTGTCTTTTAAGATGAGGTCGAAGATTAATGTACTATGCATCAAGAATATATATTACCTGATG
CTATCTTTGTCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56259.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis