Browse Element(s) Details


Os.56278.1.S1_at

Description gb:AK109747.1
DB_XREF= gi:32994956
TID=Os.56278.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56278 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-146-F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-F04, full insert sequence.
FL= gb:AK109747.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3895011/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38900Os.23421.1.S1_at11/1112+23885360..23889818Chorismate mutase, chloroplast precursor, putative, expressed
LOC_Os12g38910Os.53867.1.S1_s_at11/1112+23892149..23895285expressed protein
LOC_Os12g38910Os.53867.1.S1_at11/1112+23892149..23895285expressed protein
LOC_Os12g38920Os.26843.1.S1_at11/1112+23897862..23902154Heparanase-like protein 2 precursor, putative, expressed
LOC_Os12g38930Os.8792.1.S1_at11/1112+23902336..23907840Glycosyl transferase family 8 protein, expressed
LOC_Os12g38940Os.53057.1.S1_at11/1112+23910570..23913206Zinc finger, C2H2 type family protein, expressed
LOC_Os12g38950Os.56278.1.S1_at11/1112+23914654..23918334Zinc finger, C2H2 type family protein, expressed
LOC_Os12g38960Os.32996.1.S1_at11/1112+23918703..23922532Zinc finger, C2H2 type family protein, expressed
LOC_Os12g38970Os.11217.1.S1_at11/1112+23926998..23934518Leo1, expressed
LOC_Os12g38970Os.36267.1.S2_s_at11/1112+23926998..23934518Leo1, expressed
LOC_Os12g38970Os.36267.1.S1_s_at10/1112+23926998..23934518Leo1, expressed
LOC_Os12g38980OsAffx.20017.1.S1_at11/1112+23937166..23938105hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56278.1.S1_at--663--891Chr12:23915186..23915210 (25 bp)
AGGCCGACAATTTCAGCTCTATCAA
LOC_Os12g38950
Os.56278.1.S1_at--193--4331Chr12:23915117..23915141 (25 bp)
CCATCACTGGTGTTGCTGATACCAA
LOC_Os12g38950
Os.56278.1.S1_at--133--1871Chr12:23915024..23915048 (25 bp)
ACGACGACAGTTCCAGCTCTATGGA
LOC_Os12g38950
Os.56278.1.S1_at--503--831Chr12:23915004..23915028 (25 bp)
ATGGATGATCTCAAAACTCTGGCTC
LOC_Os12g38950
Os.56278.1.S1_at--303--8491Chr12:23914985..23915009 (25 bp)
TGGCTCCCACTGATACCAATTCAGA
LOC_Os12g38950
Os.56278.1.S1_at--151--6651Chr12:23914932..23914956 (25 bp)
GTTGATACCAATATTCCTGACCACA
LOC_Os12g38950
Os.56278.1.S1_at--648--2131Chr12:23914910..23914934 (25 bp)
ACAGTGATCCTTCTGCGATGCAGAC
LOC_Os12g38950
Os.56278.1.S1_at--684--5671Chr12:23914817..23914841 (25 bp)
GACTTGATTTTCGTCTACTGGTAGA
LOC_Os12g38950
Os.56278.1.S1_at--2--6491Chr12:23914778..23914802 (25 bp)
GATACTCATACGACTTTCTGTTTCA
LOC_Os12g38950
Os.56278.1.S1_at--1050--7431Chr12:23914743..23914767 (25 bp)
GTGTACAAACCTCTTCTGAATGGCA
LOC_Os12g38950
Os.56278.1.S1_at--1041--2051Chr12:23914710..23914734 (25 bp)
ACTTCTGTATTCTTTGCACTCTTGC
LOC_Os12g38950
Target Sequence 
AGGCCGACAATTTCAGCTCTATCAATGATCTCAGTACAATTGATACAAATTCAGACAAGAAGAAAAATACCATCACTGGT
GTTGCTGATACCAATATTCCTGACCACAAAGATCCTTCTAGGATGCAGATGCAAATCAAGCTTGATCTCAATCTGCCACC
TCACGACGACAGTTCCAGCTCTATGGATGATCTCAAAACTCTGGCTCCCACTGATACCAATTCAGATAAGGAGACGAACA
CCGGCAATGGTGGTGTTGATACCAATATTCCTGACCACAGTGATCCTTCTGCGATGCAGACGAAAAACAAGCTTGATTTC
AATCTTCCGCCTCGCAATGACAGTTCAGATTCATTAGTCTGAAATGAAAGACTTGATTTTCGTCTACTGGTAGATAGTTA
CAGGCTATGATACTCATACGACTTTCTGTTTCAGAAGCAACAAGTGTACAAACCTCTTCTGAATGGCAAAGTCCATACTT
CTGTATTCTTTGCACTCTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56278.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis