Browse Element(s) Details


Os.56288.1.S1_at

Description gb:AK109773.1
DB_XREF= gi:32994982
TID=Os.56288.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56288 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-B02, full insert sequence.
FL= gb:AK109773.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4092011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40880OsAffx.27266.1.S1_at10/115+23891210..23892247hypothetical protein
LOC_Os05g40880OsAffx.20993.1.S1_at1/115+23891210..23892247hypothetical protein
LOC_Os05g40890Os.10823.1.S1_x_at11/115+23895371..23896542expressed protein
LOC_Os05g40890Os.10823.2.S1_at11/115+23895371..23896542expressed protein
LOC_Os05g40900Os.26497.1.S1_at11/115+23907303..23911230expressed protein
LOC_Os05g40900OsAffx.4583.1.S1_s_at11/115+23907303..23911230expressed protein
LOC_Os05g40900OsAffx.19953.4.S1_s_at11/115+23907303..23911230expressed protein
LOC_Os05g40900OsAffx.19953.5.S1_x_at11/115+23907303..23911230expressed protein
LOC_Os05g40910Os.51274.1.S1_at9/115+23912941..23914408expressed protein
LOC_Os05g40920Os.56288.1.S1_at11/115+23917060..23919400expressed protein
LOC_Os05g40930NANA5+23923527..23924994retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g40940OsAffx.25819.2.S1_at11/115+23925218..23927091hypothetical protein
LOC_Os05g40940OsAffx.25819.3.S1_at3/115+23925218..23927091hypothetical protein
LOC_Os05g40940OsAffx.25819.1.S1_at1/115+23925218..23927091hypothetical protein
LOC_Os05g40940OsAffx.13875.1.S1_at1/115+23925218..23927091hypothetical protein
LOC_Os05g40950Os.56225.1.S1_at11/115+23930253..23931294expressed protein
LOC_Os05g40960OsAffx.27267.1.S1_at11/115+23932212..23934242myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os05g40970NANA5+23936885..23938426expressed protein
LOC_Os05g40980Os.24217.1.A1_s_at11/115+23940462..23942904Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56288.1.S1_at--988--5691Chr05:23917633..23917657 (25 bp)
GACTATTGCTAAAGATGCCCCTCCT
LOC_Os05g40920
Os.56288.1.S1_at--183--5291Chr05:23917516..23917540 (25 bp)
GAAGGACCTCCTTAAAGTCATCCCT
LOC_Os05g40920
Os.56288.1.S1_at--937--6471Chr05:23917470..23917494 (25 bp)
GATACCGTATGGGAGCTTGGGCAAA
LOC_Os05g40920
Os.56288.1.S1_at--120--6051Chr05:23917439..23917463 (25 bp)
GAGATCTTACTGTGACCTGCTTCAA
LOC_Os05g40920
Os.56288.1.S1_at--1022--991Chr05:23917415..23917439 (25 bp)
AGGATGTTGACGGTTTCCTCACATT
LOC_Os05g40920
Os.56288.1.S1_at--664--10291Chr05:23917402..23917426 (25 bp)
TTTCCTCACATTGGGCGTGCTTAAA
LOC_Os05g40920
Os.56288.1.S1_at--1119--9771Chr05:23917354..23917378 (25 bp)
TAAGGTTGCTGCACTCTGGACAGTT
LOC_Os05g40920
Os.56288.1.S1_at--1061--2431Chr05:23917299..23917323 (25 bp)
AAAAGGGCTATGTTGCTCCGCTCAC
LOC_Os05g40920
Os.56288.1.S1_at--48--9011Chr05:23917213..23917237 (25 bp)
TGAAGGCCTCGTTACTGGCAACTTT
LOC_Os05g40920
Os.56288.1.S1_at--1081--7431Chr05:23917168..23917192 (25 bp)
GTGTACTCCATGTTTTGTTCCTTAC
LOC_Os05g40920
Os.56288.1.S1_at--484--1891Chr05:23917145..23917169 (25 bp)
ACGTTCCATCGTCTGTGAGTATTTG
LOC_Os05g40920
Target Sequence 
GACTATTGCTAAAGATGCCCCTCCTGCTGTGGAGGTGAAGGCGGAGTCTGGTGTTGGTACACTGGGCTGCGCCTTCTGGC
GCACTTCCCTTGGGTCTATCCTCTGCTATGACCCGGGGAAGGACCTCCTTAAAGTCATCCCTGCCCCTCGAGTGGTAAAC
CAAGATACCGTATGGGAGCTTGGGCAAATGGAGGGAGATCTTACTGTGACCTGCTTCAAGGATGTTGACGGTTTCCTCAC
ATTGGGCGTGCTTAAAATAAACAAGCGACTGTTTGATGATAAGGTTGCTGCACTCTGGACAGTTGTCGGCTCATTCTCCG
GGGAGAAGGTTGGCAAAAGGGCTATGTTGCTCCGCTCACAAGGCGCCGCAGAGGTCGTTGTCTGGGAACCCTTGGAGGAG
CGCGTCGTCGCCATGGACCTTGAAGGCCTCGTTACTGGCAACTTTGGGCCCCTAACCAATGAAGGGTGTACTCCATGTTT
TGTTCCTTACGTTCCATCGTCTGTGAGTATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56288.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis