Browse Element(s) Details


Os.5659.3.S1_x_at

Description gb:AK103417.1
DB_XREF= gi:32988626
TID=Os.5659.3
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5659 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033128J01, full insert sequence.
FL= gb:AK103417.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5213011/11F-box family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52100NANA2+31880257..31886393retrotransposon protein, putative, unclassified
LOC_Os02g52110NANA2+31887021..31890162retrotransposon protein, putative, unclassified
LOC_Os02g52120OsAffx.24830.1.S1_at11/112+31894315..31894800hypothetical protein
LOC_Os02g52130Os.5659.3.S1_x_at11/112+31902799..31905783F-box family protein, putative, expressed
LOC_Os02g52130Os.5659.1.S1_at10/112+31902799..31905783F-box family protein, putative, expressed
LOC_Os02g52140Os.16129.1.S1_at11/112+31910246..31914733Polyadenylate-binding protein 2, putative, expressed
LOC_Os02g52150Os.12257.1.S1_at11/112+31914985..31916538Hsp20/alpha crystallin family protein, expressed
LOC_Os02g52160Os.20268.1.S1_at11/112+31917945..31925043LMBR1 integral membrane family protein, putative, expressed
LOC_Os02g52160Os.20268.1.S2_at11/112+31917945..31925043LMBR1 integral membrane family protein, putative, expressed
LOC_Os02g52170Os.57301.1.S1_at11/112+31926416..31927447expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5659.3.S1_x_at--161--7231Chr02:31905225..31905249 (25 bp)
GTCGACGACAAGTTCCTGCAGGAGA
LOC_Os02g52130
Os.5659.3.S1_x_at--162--8371Chr02:31905279..31905303 (25 bp)
GGCGTCGACGACTGCTTCGAGAACA
LOC_Os02g52130
Os.5659.3.S1_x_at--850--10631Chr02:31905294..31905318 (25 bp)
TTCGAGAACAGCTACCTGGAGGAGT
LOC_Os02g52130
Os.5659.3.S1_x_at--355--991Chr02:31905313..31905337 (25 bp)
AGGAGTGCTCCGACTACTCCGACGA
LOC_Os02g52130
Os.5659.3.S1_x_at--459--1851Chr02:31905406..31905430 (25 bp)
ACGAGGCCATTTGGGACGACGGCCA
LOC_Os02g52130
Os.5659.3.S1_x_at--444--5851Chr02:31905514..31905538 (25 bp)
GACCATGAGAGCAGCTCAGCTCAGC
LOC_Os02g52130
Os.5659.3.S1_x_at--77--6651Chr02:31905616..31905640 (25 bp)
GTTGTTGTACTCTGTGTGTGTGCGC
LOC_Os02g52130
Os.5659.3.S1_x_at--1088--9191Chr02:31905644..31905668 (25 bp)
TGCCAGTGTGTCATCAGCATCACTA
LOC_Os02g52130
Os.5659.3.S1_x_at--872--1531Chr02:31905659..31905683 (25 bp)
AGCATCACTAGCTTGCAGTGCAGAT
LOC_Os02g52130
Os.5659.3.S1_x_at--189--7391Chr02:31905686..31905710 (25 bp)
GTGTGAGTGAACTTCTACGGCTAGT
LOC_Os02g52130
Os.5659.3.S1_x_at--245--1231Chr02:31905708..31905732 (25 bp)
AGTTGTTACTACTACTACATCCAGA
LOC_Os02g52130
Target Sequence 
GTCGACGACAAGTTCCTGCAGGAGAGGCACCCGGGGCTGAGGGTGCTCGGCCCCGGCGTCGACGACTGCTTCGAGAACAG
CTACCTGGAGGAGTGCTCCGACTACTCCGACGACTCCTCCATCTACTCGTGGGAGCTCATGGAGGACGACGACGACGACT
ACTACGCCGTCGGGAGCGNCNACGAGGCCATTTGGGACGACGGCCAGGNCCTCGAGAACCTGGAGGTCAGGTTCTACGGC
GGCGGCTTCAGCGAGAGCTATNGCTGGCTTCGATTGGCCACCATCACCATGACCATGAGAGCAGCTCAGCTCAGCTCAGT
CCCTGACCTCACTGTCCNTTGCTCTTCCTNCTNCGANGCCGTGTACCTAAGCTTNGCAGTTGCNAGTNCTNGCAGATGTG
TTGTTGTACTCTGTGTGTGTGCGCGTGTGCCAGTGTGTCATCAGCATCACTAGCTTGCAGTGCAGATATGTGTGAGTGAA
CTTCTACGGCTAGTTGTTACTACTACTACATCCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5659.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis