Browse Element(s) Details


Os.5666.1.S1_at

Description gb:AK112041.1
DB_XREF= gi:37988704
TID=Os.5666.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5666 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023078M02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-044-H11, full insert sequence.
FL= gb:AK100312.1 gb:AK112041.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1558011/11Cyclic nucleotide-gated ion channel 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15550Os.28095.1.S1_at11/112+8726613..8730643Spermidine synthase 1, putative, expressed
LOC_Os02g15550Os.21831.1.S1_at1/112+8726613..8730643Spermidine synthase 1, putative, expressed
LOC_Os02g15560Os.9016.1.S1_x_at11/112+8732272..8737877transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g15560OsAffx.26273.1.S1_at6/112+8732272..8737877transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g15570OsAffx.2625.1.S1_at11/112+8741014..8742325hypothetical protein
LOC_Os02g15580Os.5666.1.S1_at11/112+8747017..8754114Cyclic nucleotide-gated ion channel 1, putative, expressed
LOC_Os02g15580Os.5666.2.S1_at11/112+8747017..8754114Cyclic nucleotide-gated ion channel 1, putative, expressed
LOC_Os02g15594Os.27158.1.S1_at11/112+8760003..8766248protein phosphatase 2C, putative, expressed
LOC_Os02g15610Os.47970.1.S1_at11/112+8766791..876927840S ribosomal protein S15a, putative, expressed
LOC_Os02g15620OsAffx.2626.1.S1_at11/112+8779113..8781621AT-rich element binding factor 3, putative

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Gene Ontology Classification
GO idTypeName
GO:0005216molecular_functionion channel activity
GO:0005242molecular_functioninward rectifier potassium channel activity
GO:0005261molecular_functioncation channel activity
GO:0005516molecular_functioncalmodulin binding
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5666.1.S1_at--106--4831Chr02:8747561..8747585 (25 bp)
GCTCAGTCTTGGTGCGGCGCTATAT
LOC_Os02g15580
Os.5666.1.S1_at--13--271Chr02:8747540..8747564 (25 bp)
ATATGCTTCACGTTTTGCTGGTAAT
LOC_Os02g15580
Os.5666.1.S1_at--1080--5511Chr02:8747496..8747520 (25 bp)
GAAATGCCACTCGAAAGGCCCGTTT
LOC_Os02g15580
Os.5666.1.S1_at--789--5411Chr02:8747441..8747465 (25 bp)
GAAGCCTGCAGAACCGAACTTTTTC
LOC_Os02g15580
Os.5666.1.S1_at--349--9311Chr02:8747346..8747370 (25 bp)
TCCCCTGCTGATATACCATTTTTCA
LOC_Os02g15580
Os.5666.1.S1_at--631--1271Chr02:8747294..8747318 (25 bp)
AGACCATTTGGTTCCAAGCCTTTTG
LOC_Os02g15580
Os.5666.1.S1_at--860--6532Chr03:34520127..34520146 (20 bp)
GATTTACCGTTGGATCTTCATCTAT
NONE
Os.5666.1.S1_at--710--9791Chr02:8747187..8747211 (25 bp)
TAAGCATTCCACTTCCACATTGTAT
LOC_Os02g15580
Os.5666.1.S1_at--907--2071Chr02:8747171..8747195 (25 bp)
ACATTGTATTCTTGTACTCCTGCCT
LOC_Os02g15580
Os.5666.1.S1_at--942--10411Chr02:8747047..8747071 (25 bp)
TTATTAAACCCTCCCATCATTTTTG
LOC_Os02g15580
Os.5666.1.S1_at--501--6471Chr02:8747021..8747046 (25 bp)
GATAAACATGGTATGCTCGCTTCAT
LOC_Os02g15580
Target Sequence 
GCTCAGTCTTGGTGCGGCGCTATATGCTTCACGTTTTGCTGGTAATATGATGCGGATCTTACGGAGAAATGCCACTCGAA
AGGCCCGTTTGCAGGAAAGAGTGCCTGCAAGGTTATTACAGAAGCCTGCAGAACCGAACTTTTTCGCTGAAGATCAGTAA
TGTCCATACTTTGCTACATGCAGAAATTGATGCTTCAGCTGGTAAAAGTTCTCTCTCCCCTGCTGATATACCATTTTTCA
GTATATGATTGAATTCTGTACATAGATAGACCATTTGGTTCCAAGCCTTTTGGTTTATATAAGATAATTCGATTTACCGT
TGGATCTTCATCTATACATGTAATATTTGTGTTGTACATGGAATGCATGTATTATAAGCATTCCACTTCCACATTGTATT
CTTGTACTCCTGCCTCTGGGGAATCCTTGAAATGGAAGACCTTGTAAATGTAACTGATCACGAGGGCGTTGTATGTATGA
TAGACTTCTTTCCCCCTGAATGCAATGTATGATGTTATTAAACCCTCCCATCATTTTTGGATAAACATGGTATGCTCGCT
TCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5666.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis