Browse Element(s) Details


Os.5670.1.S1_at

Description gb:AK069803.1
DB_XREF= gi:32979827
TID=Os.5670.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5670 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023027O10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023027O10, full insert sequence.
FL= gb:AK069803.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2379011/11Polygalacturonase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23760NANA8+14247040..14250267retrotransposon protein, putative, unclassified
LOC_Os08g23770Os.33601.3.S1_x_at2/118+14250874..14262006retrotransposon protein, putative, unclassified
LOC_Os08g23780Os.13608.1.S1_at11/118+14265084..14270229Glycosyltransferase QUASIMODO1, putative, expressed
LOC_Os08g23790Os.5670.1.S1_at11/118+14271321..14273725Polygalacturonase family protein, expressed
LOC_Os08g23800OsAffx.5906.1.S1_at11/118+14275974..14277742hypothetical protein
LOC_Os08g23810Os.2695.1.S1_at11/118+14281493..14286148Enoyl, chloroplast precursor, putative, expressed
LOC_Os08g23820OsAffx.29321.1.S1_at11/118+14292491..14292937hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004650molecular_functionpolygalacturonase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5670.1.S1_at--1123--2851Chr08:14271769..14271793 (25 bp)
AAGTGCGAGAACGTCAGGGCCAAGT
LOC_Os08g23790
Os.5670.1.S1_at--998--6391Chr08:14271685..14271709 (25 bp)
GATCGTTAATTTTTTGCATGCTGTC
LOC_Os08g23790
Os.5670.1.S1_at--789--4891Chr08:14271623..14271647 (25 bp)
GCTTAGCTAGCTCCGATTAATGTGT
LOC_Os08g23790
Os.5670.1.S1_at--428--10491Chr08:14271607..14271631 (25 bp)
TTAATGTGTCGTGCACTGAGCTTAA
LOC_Os08g23790
Os.5670.1.S1_at--693--10391Chr08:14271563..14271587 (25 bp)
TTTTCCCTTTATGCTACTTAGACGA
LOC_Os08g23790
Os.5670.1.S1_at--952--10591Chr08:14271526..14271550 (25 bp)
TTCTCCTTCATGTACGTTTCTTAGA
LOC_Os08g23790
Os.5670.1.S1_at--733--4291Chr08:14271473..14271497 (25 bp)
CCTCTCCCTTGACGCTTAATTATAG
LOC_Os08g23790
Os.5670.1.S1_at--371--2871Chr08:14271429..14271453 (25 bp)
AAGTGAGCTGCCGATTACTGGCATT
LOC_Os08g23790
Os.5670.1.S1_at--718--7351Chr08:14271383..14271407 (25 bp)
GTGAATACCCCAATGTCATGCTTAA
LOC_Os08g23790
Os.5670.1.S1_at--352--9811Chr08:14271341..14271365 (25 bp)
TAAACTGTCTCAAAAGCCGTCTGGT
LOC_Os08g23790
Os.5670.1.S1_at--1004--2351Chr08:14271329..14271353 (25 bp)
AAAGCCGTCTGGTTCGATCCATCAT
LOC_Os08g23790
Target Sequence 
AAGTGCGAGAACGTCAGGGCCAAGTACGCCGGCTTCCAGAACCCCAAGCCGTGCCCGTAGCCCCATGACGACGATCTGTG
ACGAGATCGTTAATTTTTTGCATGCTGTCTTGGCAAGCATGCACCTAGCAAGCAACAAAGACACTAGCTTAGCTAGCTCC
GATTAATGTGTCGTGCACTGAGCTTAATTAATTTGTGATTCTTTTCTTTTCCCTTTATGCTACTTAGACGATTTTCTTTT
CTTTTCTCCTTCATGTACGTTTCTTAGACGATTTTGTTGCTTTGATTTTTTTTNCCCCTCTCCCTTGACGCTTAATTATA
GTGGATTCTGTACGTGGTATAAGTGAGCTGCCGATTACTGGCATTAGTTTCTGAATCACTCAACTTGTGAATACCCCAAT
GTCATGCTTAATTAATTGGAACAAAGACTAAACTGTCTCAAAAGCCGTCTGGTTCGATCCATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5670.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis