Browse Element(s) Details


Os.56815.1.S1_at

Description gb:AK110449.1
DB_XREF= gi:32995658
TID=Os.56815.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56815 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-166-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-166-E04, full insert sequence.
FL= gb:AK110449.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1896011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g18930OsAffx.27698.1.S1_at11/116+10755375..10758996hypothetical protein
LOC_Os06g18930OsAffx.27697.1.S1_at11/116+10755375..10758996hypothetical protein
LOC_Os06g18940OsAffx.2494.1.S1_at1/116+10763396..10766597hypothetical protein
LOC_Os06g18940OsAffx.12184.1.S1_x_at1/116+10763396..10766597hypothetical protein
LOC_Os06g18950OsAffx.22699.1.S1_x_at2/116+10766948..10773882retrotransposon protein, putative, unclassified
LOC_Os06g18950OsAffx.8279.1.S1_at1/116+10766948..10773882retrotransposon protein, putative, unclassified
LOC_Os06g18950OsAffx.31867.1.S1_x_at1/116+10766948..10773882retrotransposon protein, putative, unclassified
LOC_Os06g18960Os.56815.1.S1_at11/116+10779824..10783834expressed protein
LOC_Os06g18970OsAffx.27699.1.S1_at10/116+10790823..10797650hypothetical protein
LOC_Os06g18970Os.41695.15.S1_s_at7/116+10790823..10797650hypothetical protein
LOC_Os06g18970OsAffx.29202.1.S1_at1/116+10790823..10797650hypothetical protein
LOC_Os06g18980OsAffx.27700.1.S1_at11/116+10802013..10802563expressed protein
LOC_Os06g18990Os.52488.1.S1_at11/116+10805443..10808644expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56815.1.S1_at--479--8631Chr06:10780383..10780407 (25 bp)
TGGGTAACCCCGTGATGCGTGACAA
LOC_Os06g18960
Os.56815.1.S1_at--652--9131Chr06:10780368..10780392 (25 bp)
TGCGTGACAACAACTACCCTCGGTA
LOC_Os06g18960
Os.56815.1.S1_at--322--9431Chr06:10780349..10780373 (25 bp)
TCGGTACAACGCGTTCTTCTACTGC
LOC_Os06g18960
Os.56815.1.S1_at--23--9931Chr06:10780330..10780354 (25 bp)
TACTGCAACTCTACATCCTTTATGG
LOC_Os06g18960
Os.56815.1.S1_at--330--7871Chr06:10780252..10780276 (25 bp)
GGTTTCCTGCTCTATGCCATGAATA
LOC_Os06g18960
Os.56815.1.S1_at--342--271Chr06:10780230..10780254 (25 bp)
ATATGGTCATCGTGGTCGATCTGCT
LOC_Os06g18960
Os.56815.1.S1_at--1116--5971Chr06:10780162..10780186 (25 bp)
GAGACGTCTGGGTATGTCATCGCTC
LOC_Os06g18960
Os.56815.1.S1_at--473--10831Chr06:10780128..10780152 (25 bp)
TTGTGCTTGCCTGCATCATGATCCA
LOC_Os06g18960
Os.56815.1.S1_at--364--1331Chr06:10780049..10780073 (25 bp)
AGAGATTAACACACTTCCGGTCAAC
LOC_Os06g18960
Os.56815.1.S1_at--1--591Chr06:10779939..10779963 (25 bp)
ATCCAGTAGATCTTCCTTGTTTTCC
LOC_Os06g18960
Os.56815.1.S1_at--11--6531Chr06:10779906..10779930 (25 bp)
GATATTGTCCCGTGCTTATGTATAG
LOC_Os06g18960
Target Sequence 
TGGGTAACCCCGTGATGCGTGACAACAACTACCCTCGGTACAACGCGTTCTTCTACTGCAACTCTACATCCTTTATGGCA
TCCATTATTGTCATCATCCTGCTGCTACAGCAGTATCAAAAGAAGTATGGTGGTTTCCTGCTCTATGCCATGAATATGGT
CATCGTGGTCGATCTGCTCGGCCTCCTTGGGGCTTACGCGGCCGGCAGCTGCAGAGACTGGGAGACGTCTGGGTATGTCA
TCGCTCTGGCTGTTGTTGTGCTTGCCTGCATCATGATCCACTTCATGTTGTTGTACCATAATGGAAGGTCCAAAGGAAGG
GTGGGAGGAGTCCAAGAGATTAACACACTTCCGGTCAACCATAGTTAAAAAAATTGAGCTAGAGTGCATATATCATATAT
ACTTGTGTTCATTTGATTTATACCATCACATGGTTGTTCTATGAATCCAGTAGATCTTCCTTGTTTTCCATCTTTAAGAT
ATTGTCCCGTGCTTATGTATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56815.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis