Browse Element(s) Details


OsAffx.27697.1.S1_at

Description tigr:9634.m01822
TID=OsAffx.27697.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=137718 embryogenesis transmembrane protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1893011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g18890NANA6+10730135..10730489hypothetical protein
LOC_Os06g18900Os.40342.1.A1_s_at11/116+10737693..10741349embryogenesis transmembrane protein, putative, expressed
LOC_Os06g18900OsAffx.15485.1.S1_at11/116+10737693..10741349embryogenesis transmembrane protein, putative, expressed
LOC_Os06g18900Os.18183.1.S1_at1/116+10737693..10741349embryogenesis transmembrane protein, putative, expressed
LOC_Os06g18910OsAffx.4869.1.S1_at11/116+10742132..10743460hypothetical protein
LOC_Os06g18920OsAffx.3235.1.S1_at1/116+10747593..10748711expressed protein
LOC_Os06g18930OsAffx.27698.1.S1_at11/116+10755375..10758996hypothetical protein
LOC_Os06g18930OsAffx.27697.1.S1_at11/116+10755375..10758996hypothetical protein
LOC_Os06g18940OsAffx.2494.1.S1_at1/116+10763396..10766597hypothetical protein
LOC_Os06g18940OsAffx.12184.1.S1_x_at1/116+10763396..10766597hypothetical protein
LOC_Os06g18950OsAffx.22699.1.S1_x_at2/116+10766948..10773882retrotransposon protein, putative, unclassified
LOC_Os06g18950OsAffx.8279.1.S1_at1/116+10766948..10773882retrotransposon protein, putative, unclassified
LOC_Os06g18950OsAffx.31867.1.S1_x_at1/116+10766948..10773882retrotransposon protein, putative, unclassified
LOC_Os06g18960Os.56815.1.S1_at11/116+10779824..10783834expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27697.1.S1_at--386--9911Chr06:10757743..10757767 (25 bp)
TACTCCCTCGGCAACGTCGTGGCGT
LOC_Os06g18930
OsAffx.27697.1.S1_at--247--9451Chr06:10757750..10757774 (25 bp)
TCGGCAACGTCGTGGCGTTCACCAC
LOC_Os06g18930
OsAffx.27697.1.S1_at--53--1471Chr06:10757828..10757852 (25 bp)
AGAAGGTTCTAGAGAGGCTGCACCT
LOC_Os06g18930
OsAffx.27697.1.S1_at--811--9031Chr06:10757846..10757870 (25 bp)
TGCACCTCTGGGACGGCCAGGCCGA
LOC_Os06g18930
OsAffx.27697.1.S1_at--332--4531Chr06:10757929..10757953 (25 bp)
GCCGCCACCGTGACGTACAAGACAG
LOC_Os06g18930
OsAffx.27697.1.S1_at--426--7371Chr06:10757938..10757962 (25 bp)
GTGACGTACAAGACAGGGCTGAACC
LOC_Os06g18930
OsAffx.27697.1.S1_at--761--8211Chr06:10757968..10757992 (25 bp)
GGCGGGTTCTGGTCGGGCTCCGACG
LOC_Os06g18930
OsAffx.27697.1.S1_at--1048--9951Chr06:10758028..10758052 (25 bp)
TACCGGAACCGGTACATGGTGTTCT
LOC_Os06g18930
OsAffx.27697.1.S1_at--853--3751Chr06:10758097..10758121 (25 bp)
CTCATGCTCGTCAACCGGCGGCTGT
LOC_Os06g18930
OsAffx.27697.1.S1_at--612--9851Chr06:10758121..10758145 (25 bp)
TACAAGCAGGGCATCCGGTGCAACG
LOC_Os06g18930
OsAffx.27697.1.S1_at--128--1091Chr06:10758128..10758152 (25 bp)
AGGGCATCCGGTGCAACGCGCTCAA
LOC_Os06g18930
Target Sequence 
TACTCCCTCGGCAACGTCGTGGCGTTCACCACCATGGGGCGGAGCAGGGAGACGAGGCTGATGCGGTGGGTGGACGGGAT
GGTCCAGAAGGTTCTAGAGAGGCTGCACCTCTGGGACGGCCAGGCCGAGGAAGCCGACGACGACCTGGAGAGGAAGCGCA
AGTTCTTGCTGCAGCTCGCCATCCTCGCCGCCACCGTGACGTACAAGACAGGGCTGAACCCGCCGGGCGGGTTCTGGTCG
GGCTCCGACGACGGCCGCGCCGGCGACCCGGTCCTCGTCGACCACTACCGGAACCGGTACATGGTGTTCTTCTACTGCAA
CGCGACGGGGTTCATGGCGTCCGTCGCCGTCATCCTCATGCTCGTCAACCGGCGGCTGTACAAGCAGGGCATCCGGTGCA
ACGCGCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27697.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis