Browse Element(s) Details


OsAffx.27698.1.S1_at

Description tigr:9634.m01823
TID=OsAffx.27698.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1893011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g18890NANA6+10730135..10730489hypothetical protein
LOC_Os06g18900Os.40342.1.A1_s_at11/116+10737693..10741349embryogenesis transmembrane protein, putative, expressed
LOC_Os06g18900OsAffx.15485.1.S1_at11/116+10737693..10741349embryogenesis transmembrane protein, putative, expressed
LOC_Os06g18900Os.18183.1.S1_at1/116+10737693..10741349embryogenesis transmembrane protein, putative, expressed
LOC_Os06g18910OsAffx.4869.1.S1_at11/116+10742132..10743460hypothetical protein
LOC_Os06g18920OsAffx.3235.1.S1_at1/116+10747593..10748711expressed protein
LOC_Os06g18930OsAffx.27698.1.S1_at11/116+10755375..10758996hypothetical protein
LOC_Os06g18930OsAffx.27697.1.S1_at11/116+10755375..10758996hypothetical protein
LOC_Os06g18940OsAffx.2494.1.S1_at1/116+10763396..10766597hypothetical protein
LOC_Os06g18940OsAffx.12184.1.S1_x_at1/116+10763396..10766597hypothetical protein
LOC_Os06g18950OsAffx.22699.1.S1_x_at2/116+10766948..10773882retrotransposon protein, putative, unclassified
LOC_Os06g18950OsAffx.8279.1.S1_at1/116+10766948..10773882retrotransposon protein, putative, unclassified
LOC_Os06g18950OsAffx.31867.1.S1_x_at1/116+10766948..10773882retrotransposon protein, putative, unclassified
LOC_Os06g18960Os.56815.1.S1_at11/116+10779824..10783834expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27698.1.S1_at--439--5831Chr06:10758622..10758646 (25 bp)
GACCGGGCGAGGTACCACGCCTTCT
LOC_Os06g18930
OsAffx.27698.1.S1_at--655--4251Chr06:10758677..10758701 (25 bp)
CCGTGGTGGTGATCGTTCTGCTGCT
LOC_Os06g18930
OsAffx.27698.1.S1_at--664--4711Chr06:10758741..10758765 (25 bp)
GCTGTGGGCGATGCAGTCGGCGGTG
LOC_Os06g18930
OsAffx.27698.1.S1_at--1135--4751Chr06:10758809..10758833 (25 bp)
GCTGCAGGGAGTGGGAGACGTCGGC
LOC_Os06g18930
OsAffx.27698.1.S1_at--1131--4491Chr06:10758856..10758880 (25 bp)
GCCGTCGTGGTGTACATCGCGCTGC
LOC_Os06g18930
OsAffx.27698.1.S1_at--438--9431Chr06:10758860..10758884 (25 bp)
TCGTGGTGTACATCGCGCTGCACGT
LOC_Os06g18930
OsAffx.27698.1.S1_at--649--9031Chr06:10758878..10758902 (25 bp)
TGCACGTGCTGCTGTCCTTCGACGC
LOC_Os06g18930
OsAffx.27698.1.S1_at--699--4231Chr06:10758917..10758941 (25 bp)
CCGAGAGGCTCAAGGTCTGGAGATA
LOC_Os06g18930
OsAffx.27698.1.S1_at--1161--891Chr06:10758922..10758946 (25 bp)
AGGCTCAAGGTCTGGAGATACTTCG
LOC_Os06g18930
OsAffx.27698.1.S1_at--1141--2891Chr06:10758928..10758952 (25 bp)
AAGGTCTGGAGATACTTCGGCGAGA
LOC_Os06g18930
OsAffx.27698.1.S1_at--156--9471Chr06:10758932..10758956 (25 bp)
TCTGGAGATACTTCGGCGAGAGCTC
LOC_Os06g18930
Target Sequence 
GACCGGGCGAGGTACCACGCCTTCTTCCACTGCAACGCGACGTCGTTCGTGGCGTCCGTGGTGGTGATCGTTCTGCTGCT
GCTGCGGCGGCGGCGGCGGCGCGGCGCGCCGGCGGCGCCGCTGTGGGCGATGCAGTCGGCGGTGGTGCTGGACCTGCTCG
GCCTCCTCGGCGCCTACGCCGCGGGGAGCTGCAGGGAGTGGGAGACGTCGGCGTACGTGGTGGCGCTCGTCGGCGCCGTC
GTGGTGTACATCGCGCTGCACGTGCTGCTGTCCTTCGACGCCGTGGCGGCCAAGGCCGAGAGGCTCAAGGTCTGGAGATA
CTTCGGCGAGAGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27698.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis