Browse Element(s) Details


Os.56950.1.S1_at

Description gb:AK110619.1
DB_XREF= gi:32995828
TID=Os.56950.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56950 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-168-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-168-H12, full insert sequence.
FL= gb:AK110619.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0712011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07090Os.12993.1.S1_at11/115+3708656..3713258Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
LOC_Os05g07090Os.26897.1.S1_at3/115+3708656..3713258Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
LOC_Os05g07090OsAffx.29424.1.S1_at2/115+3708656..3713258Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
LOC_Os05g07100Os.40855.5.S1_x_at2/115+3723400..3724467hypothetical protein
LOC_Os05g07109NANA5+3730076..3732121NA
LOC_Os05g07120Os.56950.1.S1_at11/115+3734495..3737806Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os05g07130Os.15700.1.S1_at11/115+3741132..37494746-phosphofructo-2-kinase family protein, expressed
LOC_Os05g07140Os.55284.1.S1_at11/115+3750419..3751115Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g07150OsAffx.26766.1.S1_at11/115+3754191..3756033hypothetical protein
LOC_Os05g07170OsAffx.17637.1.S1_at4/115+3762045..3762419hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56950.1.S1_at--525--1511Chr05:3737215..3737239 (25 bp)
AGCACCTCAAGACGAGAGCCACCGA
LOC_Os05g07120
Os.56950.1.S1_at--1068--2571Chr05:3737283..3737307 (25 bp)
AACGAGGTGACCGTCCAATGCTACG
LOC_Os05g07120
Os.56950.1.S1_at--637--8911Chr05:3737428..3737452 (25 bp)
TGAGCGCCGACATGAGCTGCCTCGG
LOC_Os05g07120
Os.56950.1.S1_at--202--1831Chr05:3737467..3737491 (25 bp)
ACGCCTTCGTGCTCTGCAGGGAGGA
LOC_Os05g07120
Os.56950.1.S1_at--525--911Chr05:3737613..3737637 (25 bp)
AGGCTGATGATGGAGTCGCGTTACT
LOC_Os05g07120
Os.56950.1.S1_at--194--7351Chr05:3737649..3737673 (25 bp)
GTGCACACGCACGTTGATCCTCAAT
LOC_Os05g07120
Os.56950.1.S1_at--592--6651Chr05:3737661..3737685 (25 bp)
GTTGATCCTCAATATTGCTGGTACA
LOC_Os05g07120
Os.56950.1.S1_at--752--9111Chr05:3737676..3737700 (25 bp)
TGCTGGTACAATAGTCGTTAGTGAC
LOC_Os05g07120
Os.56950.1.S1_at--765--5651Chr05:3737698..3737722 (25 bp)
GACAGGTAATATACGGCGGATCGAA
LOC_Os05g07120
Os.56950.1.S1_at--1037--7991Chr05:3737727..3737751 (25 bp)
GGATGTATGAAATTCACACCTGTTA
LOC_Os05g07120
Os.56950.1.S1_at--199--1771Chr05:3737744..3737768 (25 bp)
ACCTGTTATCATTTTTTACTCGTAG
LOC_Os05g07120
Target Sequence 
AGCACCTCAAGACGAGAGCCACCGAGGCCACCACGCCGTCGACGGCGGCGACCATCCCACCGGAGGCCAACGAGGTGACC
GTCCAATGCTACGCCGGCGGCGAGCACACCGCGGCCGCGCGCACCTACGTCCGCGCCACCGTCAGCTGCGACGACCGGCC
GGGCCTCCTCGCCGACATCGCCGCCACGTTCCGCCGCCTCCGGCTGCGGCCGCTGAGCGCCGACATGAGCTGCCTCGGCG
GCCGGACGCGGCACGCCTTCGTGCTCTGCAGGGAGGAGGAGGAGGAGGAGGATGCTGCGGCGGAGGCTAGGCCTCTCAAG
GAGGCCGTGAGGCAGGCGCTGGCCAAGGTGGCGTTGCCGGAGACGGTGTACGGCGGCGGCGGCAGGAGCAAGAGGCAGAG
GCTGATGATGGAGTCGCGTTACTCGACGGCGGTCGTGCACACGCACGTTGATCCTCAATATTGCTGGTACAATAGTCGTT
AGTGACAGGTAATATACGGCGGATCGAAAAATGGATGTATGAAATTCACACCTGTTATCATTTTTTACTCGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56950.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis