Browse Element(s) Details


Os.56992.1.S1_at

Description gb:AK110703.1
DB_XREF= gi:32995912
TID=Os.56992.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56992 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-170-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-170-C04, full insert sequence.
FL= gb:AK110703.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4439411/11mRNA-associated protein mrnp 41, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g44340OsAffx.21322.1.S1_at11/111+25769450..25770894Pectinesterase family protein
LOC_Os01g44350OsAffx.2233.1.S1_x_at11/111+25772094..25772717hypothetical protein
LOC_Os01g44360Os.23714.1.A1_at11/111+25775244..25777490CBS domain containing protein, expressed
LOC_Os01g44370NANA1+25784429..25784710myb family transcription factor, putative
LOC_Os01g44380OsAffx.21320.1.S1_at11/111+25786072..25786392hypothetical protein
LOC_Os01g44390Os.41164.1.S1_at11/111+25788851..25790532myb family transcription factor, putative, expressed
LOC_Os01g44394Os.7481.1.S1_at11/111+25793211..25801105mRNA-associated protein mrnp 41, putative, expressed
LOC_Os01g44394Os.56992.1.S1_at11/111+25793211..25801105mRNA-associated protein mrnp 41, putative, expressed
LOC_Os01g44394Os.24693.1.A1_s_at1/111+25793211..25801105mRNA-associated protein mrnp 41, putative, expressed
LOC_Os01g44430NANA1+25803592..25809821ZF-HD protein dimerisation region containing protein, expressed
LOC_Os01g44940OsAffx.11469.1.S1_at10/111+25822085..25823172hypothetical protein
LOC_Os01g44950OsAffx.2235.1.S1_at11/111+25825947..25827815AMP-binding enzyme family protein

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56992.1.S1_at--928--9191Chr01:25795008..25795032 (25 bp)
TCCAATCGTGTAGGCTTTAGGTCTT
LOC_Os01g44394
Os.56992.1.S1_at--342--7811Chr01:25795027..25795051 (25 bp)
GGTCTTTTATCCTCATGTGATCAAT
LOC_Os01g44394
Os.56992.1.S1_at--1128--3131Chr01:25795127..25795151 (25 bp)
AATTAGCCAGTAACAGCTGTGCCCC
LOC_Os01g44394
Os.56992.1.S1_at--54--6831Chr01:25795178..25795202 (25 bp)
GTTTATCACTGTAACGCTGGACACT
LOC_Os01g44394
Os.56992.1.S1_at--862--5171Chr01:25795216..25795240 (25 bp)
GCAAGTTGCAACTGACGCTTCCGAT
LOC_Os01g44394
Os.56992.1.S1_at--1070--4911Chr01:25795232..25795256 (25 bp)
GCTTCCGATGCTTCAACAGGCTGAA
LOC_Os01g44394
Os.56992.1.S1_at--418--10611Chr01:25795327..25795351 (25 bp)
TTCTGGTAATGCCTTGTTTTCTCTT
LOC_Os01g44394
Os.56992.1.S1_at--789--9151Chr01:25795336..25795360 (25 bp)
TGCCTTGTTTTCTCTTTGGTCTAAA
LOC_Os01g44394
Os.56992.1.S1_at--473--9831Chr01:25795357..25795381 (25 bp)
TAAATGTGGGTTCCGTTCGATGTTT
LOC_Os01g44394
Os.56992.1.S1_at--412--3131Chr01:25795391..25795415 (25 bp)
AATTTTAGCTCCCATGTACATCCTA
LOC_Os01g44394
Os.56992.1.S1_at--231--8751Chr01:25795405..25795429 (25 bp)
TGTACATCCTAATTGCAATCTCAGT
LOC_Os01g44394
Target Sequence 
TCCAATCGTGTAGGCTTTAGGTCTTTTATCCTCATGTGATCAATATTTAATTTGTGTGAAGTGGAGGTGAAAAGTTTATT
AGGTGAAATGATATTTCTAGATTTTTTTTAACAAGAGTAAATTAGCCAGTAACAGCTGTGCCCCTCTCTACAACCAGTTC
AAATTTCTGTGTTTATCACTGTAACGCTGGACACTTTAAATGTCATTTGCAAGTTGCAACTGACGCTTCCGATGCTTCAA
CAGGCTGAATTCAAGAGGATTGTGTCACCTTTAAAACTCCAGACAAGGTGTCTTGCTGCATTTCCTGATCAGCAAGGGTT
TCTGGTAATGCCTTGTTTTCTCTTTGGTCTAAATGTGGGTTCCGTTCGATGTTTCTTCCTAATAATTTTAGCTCCCATGT
ACATCCTAATTGCAATCTCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56992.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis