Browse Element(s) Details


Os.56996.1.S1_at

Description gb:AK110715.1
DB_XREF= gi:32995924
TID=Os.56996.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56996 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-170-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-170-D05, full insert sequence.
FL= gb:AK110715.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4920011/11Cell division cycle protein cdt2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49150Os.7558.1.S1_s_at11/113+27947070..27950553Yippee, putative, expressed
LOC_Os03g49150Os.46756.1.S1_at11/113+27947070..27950553Yippee, putative, expressed
LOC_Os03g49160OsAffx.25637.1.S1_at11/113+27952610..27953506hypothetical protein
LOC_Os03g49170Os.11140.1.S1_at11/113+27957871..27961377Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os03g49180Os.9053.1.S1_at11/113+27964162..27968028Alkaline phytoceramidase family protein, expressed
LOC_Os03g49190Os.12251.1.S1_at11/113+27971039..27971998Oleosin family protein, expressed
LOC_Os03g49200Os.56996.1.S1_at11/113+27972395..27975786Cell division cycle protein cdt2, putative, expressed
LOC_Os03g49210Os.7484.1.S1_at11/113+27978580..27984261Pescadillo N-terminus family protein, expressed
LOC_Os03g49220Os.27054.1.S1_at11/113+27984660..27988144Adenylosuccinate synthetase, chloroplast precursor, putative, expressed
LOC_Os03g49230Os.22588.1.S1_at10/113+27988520..27991552N-acetyltransferase 5, putative, expressed
LOC_Os03g49230Os.36776.1.S1_at1/113+27988520..27991552N-acetyltransferase 5, putative, expressed
LOC_Os03g49240OsAffx.12144.2.A1_s_at11/113+27992704..27993996hypothetical protein
LOC_Os03g49250Os.53012.1.S1_at11/113+27995291..27997255LysM domain containing protein, expressed
LOC_Os03g49260Os.18598.1.S1_at11/113+27998774..28002905Lipoxygenase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56996.1.S1_at--606--8191Chr03:27973128..27973152 (25 bp)
GGAAGATCGCAACGTCATCTGACGA
LOC_Os03g49200
Os.56996.1.S1_at--511--471Chr03:27972903..27973136 (25 bp)
ATCTGACGATTCCAAGGTTCGCGTA
LOC_Os03g49200
Os.56996.1.S1_at--1088--5951Chr03:27972822..27972846 (25 bp)
GAGAATAACCGCACCAAACACTGGA
LOC_Os03g49200
Os.56996.1.S1_at--893--8511Chr03:27972801..27972825 (25 bp)
TGGAAGCCGGTCTGCTAGCCATGAG
LOC_Os03g49200
Os.56996.1.S1_at--651--9991Chr03:27972786..27972810 (25 bp)
TAGCCATGAGCTAGCTACTACCTCA
LOC_Os03g49200
Os.56996.1.S1_at--782--6271Chr03:27972758..27972782 (25 bp)
GATGTAGGAGTAGCAGCCTGCACCA
LOC_Os03g49200
Os.56996.1.S1_at--756--1851Chr03:27972681..27972705 (25 bp)
ACTGGAGTTTGGCACACCGGAGTCA
LOC_Os03g49200
Os.56996.1.S1_at--130--10451Chr03:27972640..27972664 (25 bp)
TTAGGTTGTTTCAGGAGGACTCATT
LOC_Os03g49200
Os.56996.1.S1_at--7--5511Chr03:27972538..27972562 (25 bp)
GAACAATTCGGGACTACTTTGCTAG
LOC_Os03g49200
Os.56996.1.S1_at--653--2711Chr03:27972491..27972515 (25 bp)
AAGCATGTCCATGACCTTGCACTCT
LOC_Os03g49200
Os.56996.1.S1_at--725--9591Chr03:27972469..27972493 (25 bp)
TCTTGGCTCACTCGTCAACTGTGAA
LOC_Os03g49200
Target Sequence 
GGAAGATCGCAACGTCATCTGACGATTCCAAGGTTCGCGTATGGAATACTGAGAGAAGGGTGTTCCCAAACACAAGTTCC
CCAACGGTCATCCGCAAGAGAATAACCGCACCAAACACTGGAAGCCGGTCTGCTAGCCATGAGCTAGCTACTACCTCAAG
AGATGTAGGAGTAGCAGCCTGCACCAGTGCAGATGGTGAATTGCCAACTGGTTCACGCTCTCCCCTTCAGCCCAGAGTAC
TGGAGTTTGGCACACCGGAGTCAGCGAAGAAGAGAGCCTTTAGGTTGTTTCAGGAGGACTCATTGGACATAAGGAAAAGC
CCAGAGGCTCAAATGAACAGCCCTTCTTCGGTTCTAAGCCCCCCACATTCACTGAAGAGGAGAACAATTCGGGACTACTT
TGCTAGTAGCTCATCTTGTGAGCACACCAAGCATGTCCATGACCTTGCACTCTTGGCTCACTCGTCAACTGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56996.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis