Browse Element(s) Details


Os.57069.1.S1_at

Description gb:AK110858.1
DB_XREF= gi:32996067
TID=Os.57069.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57069 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-D03, full insert sequence.
FL= gb:AK110858.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5732011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57290Os.37336.1.S1_at11/113+32610984..32617949Cullin-4B, putative, expressed
LOC_Os03g57300Os.22663.1.S1_at11/113+32618769..32630003expressed protein
LOC_Os03g57310Os.52260.1.S1_at11/113+32633665..32634949Syntaxin 121, putative, expressed
LOC_Os03g57320Os.57069.1.S1_at11/113+32636796..32637835expressed protein
LOC_Os03g57330Os.8102.1.S1_at11/113+32639558..32643308IQ calmodulin-binding motif family protein, expressed
LOC_Os03g57340Os.12385.1.S1_at11/113+32647348..32650266DnaJ protein homolog, putative, expressed
LOC_Os03g57349Os.10425.1.S1_at11/113+32654295..32654950expressed protein
LOC_Os03g57349Os.14591.1.S1_at1/113+32654295..32654950expressed protein
LOC_Os03g57360OsAffx.25777.1.S1_at9/113+32656985..32657797hypothetical protein
LOC_Os03g57370NANA3+32658690..32664811retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57069.1.S1_at--2--8491Chr03:32637218..32637317 (25 bp)
TGGCTTCGACCCGATGGTGTATACA
LOC_Os03g57320
Os.57069.1.S1_at--1159--6171Chr03:32637190..32637214 (25 bp)
GAGGAACCCTAACTGACTGCACGGT
LOC_Os03g57320
Os.57069.1.S1_at--1156--5711Chr03:32637176..32637200 (25 bp)
GACTGCACGGTTGCGTATATCAGGA
LOC_Os03g57320
Os.57069.1.S1_at--834--7111Chr03:32637048..32637072 (25 bp)
GTCAGTTTCGTCATGCAATAGGTTT
LOC_Os03g57320
Os.57069.1.S1_at--724--5231Chr03:32637017..32637041 (25 bp)
GAATCAAACACCCTAATTGCCTAGT
LOC_Os03g57320
Os.57069.1.S1_at--137--5491Chr03:32636974..32636998 (25 bp)
GAACTTGCCGGTGAATTGTCAATTT
LOC_Os03g57320
Os.57069.1.S1_at--253--5491Chr03:32636944..32636968 (25 bp)
GAACATTGGCAATCACGACCTGCTT
LOC_Os03g57320
Os.57069.1.S1_at--178--8091Chr03:32636893..32636917 (25 bp)
GGAGCTGGATTATGTGTCCCATATG
LOC_Os03g57320
Os.57069.1.S1_at--566--2151Chr03:32636861..32636885 (25 bp)
ACAGCACCATTTTTTGGACTCTTTG
LOC_Os03g57320
Os.57069.1.S1_at--46--8131Chr03:32636846..32636870 (25 bp)
GGACTCTTTGTAGGAGCTCTAGTAA
LOC_Os03g57320
Os.57069.1.S1_at--184--2511Chr03:32636799..32636823 (25 bp)
AACATGCTTCTCTGTTTTTCTGTGG
LOC_Os03g57320
Target Sequence 
TGGCTTCGACCCGATGGTGTATACACACGAGGAACCCTAACTGACTGCACGGTTGCGTATATCAGGAACCCGAAGTTTGG
CATAAACGCATAAAGAACTAGTCCTCTAGTTTCTTCTTTTTTATCTAATTTTATATAGACACAATTCCTTTTCAATAAAG
AATTTATGCTGTCAGTTTCGTCATGCAATAGGTTTTAGTTAGAATCAAACACCCTAATTGCCTAGTGAGAAACAGAGAAA
CGAAGAACTTGCCGGTGAATTGTCAATTTGTCATGAACATTGGCAATCACGACCTGCTTGGGGAGGATGAAGACAAAAGT
TGGGGGGAGCTGGATTATGTGTCCCATATGGATTGATACAGCACCATTTTTTGGACTCTTTGTAGGAGCTCTAGTAACAC
AGATGGAAATGGTCCCATGAACATGCTTCTCTGTTTTTCTGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57069.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis