Browse Element(s) Details


Os.57094.1.S1_at

Description gb:AK110910.1
DB_XREF= gi:32996119
TID=Os.57094.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57094 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-173-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-173-C01, full insert sequence.
FL= gb:AK110910.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5282011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52780Os.50342.1.S1_at11/114+31201743..31206034Leucine Rich Repeat family protein, expressed
LOC_Os04g52790OsAffx.26579.1.S1_at11/114+31213376..31213894hypothetical protein
LOC_Os04g52800OsAffx.14383.1.S1_at11/114+31215878..31216897hypothetical protein
LOC_Os04g52810OsAffx.4160.1.S1_at11/114+31220876..31224278No apical meristem protein, expressed
LOC_Os04g52820OsAffx.26580.1.S1_at11/114+31229488..31233456hypothetical protein
LOC_Os04g52820Os.57094.1.S1_at11/114+31229488..31233456hypothetical protein
LOC_Os04g52820Os.51708.1.S1_at10/114+31229488..31233456hypothetical protein
LOC_Os04g52830Os.4693.1.S1_at11/114+31239893..31242955kelch repeat-containing F-box family protein, putative, expressed
LOC_Os04g52830OsAffx.18753.3.S1_x_at1/114+31239893..31242955kelch repeat-containing F-box family protein, putative, expressed
LOC_Os04g52840Os.4555.1.S1_at11/114+31244047..31247345Protein kinase domain containing protein, expressed
LOC_Os04g52850Os.19751.1.S1_at11/114+31255319..31258257OTU-like cysteine protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57094.1.S1_at--419--92Chr04:31229956..31229980 (25 bp)
ATTCCTTTGCTGCTGATTACATAGG
LOC_Os04g52820
Os.57094.1.S1_at--274--10191Chr04:31230023..31230047 (25 bp)
TTTTCCTTCGCGTAAGACCGAGGCA
LOC_Os04g52820
Os.57094.1.S1_at--1012--6191Chr04:31230042..31230066 (25 bp)
GAGGCAATCAAGCAATACACAAGAA
LOC_Os04g52820
Os.57094.1.S1_at--723--2731Chr04:31230153..31230177 (25 bp)
AAGCAAGTCGAGGTTGCCAGCTGCT
LOC_Os04g52820
Os.57094.1.S1_at--189--5851Chr04:31230179..31230203 (25 bp)
GACCTTGTGAGTGGCCACAGCAGCA
LOC_Os04g52820
Os.57094.1.S1_at--991--8811Chr04:31230287..31230311 (25 bp)
TGTTGATTTTGTCTGTTTGCTGCTC
LOC_Os04g52820
Os.57094.1.S1_at--511--4791Chr04:31230308..31230332 (25 bp)
GCTCCCCATGCCTCTGGAACATTGG
LOC_Os04g52820
Os.57094.1.S1_at--987--9775Chr04:31230380..31230404 (25 bp)
TAAGGCTTTCCTGTCTAGAGAGTAC
LOC_Os04g52820
Os.57094.1.S1_at--185--131Chr04:31230483..31230507 (25 bp)
ATTCTTGTGTTGTATGTATTCCTGT
LOC_Os04g52820
Os.57094.1.S1_at--760--6871Chr04:31230498..31230522 (25 bp)
GTATTCCTGTATTCTGAATGCTTCA
LOC_Os04g52820
Os.57094.1.S1_at--164--4911Chr04:31230517..31230541 (25 bp)
GCTTCATGTCATCAAATTCCTTAGT
LOC_Os04g52820
Target Sequence 
ATTCCTTTGCTGCTGATTACATAGGAAAAACACAGGAAAAATAACACCCACTCCGACCTCATTTTTGTTTTCCTTCGCGT
AAGACCGAGGCAATCAAGCAATACACAAGAACTTTTACAAACACAAGCGAAGCAACTGAGCAAGAACTATGAAGGATAGG
AATAAGACACAATCCAATTAAAAAGAACAAGGGGAAGAAGCAAGTCGAGGTTGCCAGCTGCTCGACCTTGTGAGTGGCCA
CAGCAGCAGCTCACTCCTGCCACGCGCCCGTGCGAGCTCGTCACCCGACCGCCGCCTCGCTTGCTCCGCCTACCACCGAG
CTCGCCATCCCTGTTGATTTTGTCTGTTTGCTGCTCCCCATGCCTCTGGAACATTGGGGAAAAAGATGATGCGGTGAATG
AACTGATGAATGAAGGGGATAAGATAAGGCTTTCCTGTCTAGAGAGTACTTGAGAGTAGTGACTAGATAGAAAATAGTAT
TCTATTGCTTAATTAGATTATAATCTATGAGGTTACTTGATTGTAAAATTCTTGTGTTGTATGTATTCCTGTATTCTGAA
TGCTTCATGTCATCAAATTCCTTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57094.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis