Browse Element(s) Details


Os.57109.1.S1_at

Description gb:AK110932.1
DB_XREF= gi:32996141
TID=Os.57109.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57109 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-173-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-173-F11, full insert sequence.
FL= gb:AK110932.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1584011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15780OsAffx.29861.1.S1_at11/119+9637865..9641416expressed protein
LOC_Os09g15790Os.53227.1.S1_at11/119+9642565..9645171Ras-related protein Rab11B, putative, expressed
LOC_Os09g15790Os.57489.1.S1_x_at1/119+9642565..9645171Ras-related protein Rab11B, putative, expressed
LOC_Os09g15800OsAffx.29862.1.S1_at11/119+9646716..9649346pentatricopeptide, putative
LOC_Os09g15810Os.7067.1.S1_at11/119+9651208..9653971Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD-binding domain containing protein, expressed
LOC_Os09g15820Os.9769.1.S1_at11/119+9654423..9658103Aldose 1-epimerase family protein, expressed
LOC_Os09g15830OsAffx.29863.1.S1_at10/119+9660772..9661911hypothetical protein
LOC_Os09g15840Os.57109.1.S1_at11/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840Os.28346.1.S1_x_at11/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840Os.28346.1.S1_at10/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840OsAffx.17950.1.S1_at8/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840Os.24761.1.A1_at3/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840Os.28346.5.S1_x_at1/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15850OsAffx.6289.1.S1_at11/119+9680879..9688737Leucine Rich Repeat family protein, expressed
LOC_Os09g15850Os.9606.1.A1_s_at11/119+9680879..9688737Leucine Rich Repeat family protein, expressed
LOC_Os09g15850Os.9606.2.S1_s_at11/119+9680879..9688737Leucine Rich Repeat family protein, expressed
LOC_Os09g15860OsAffx.17723.1.S1_at11/119+9692656..9694069expressed protein
LOC_Os09g15870NANA9+9697514..9697813hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57109.1.S1_at--872--1511Chr09:9671698..9671722 (25 bp)
AGCAGATGTTGCTTACTGGTAGACA
LOC_Os09g15840
Os.57109.1.S1_at--398--951Chr09:9671634..9671658 (25 bp)
AGTAGCTAAGCTGATTTCCACCGTT
LOC_Os09g15840
Os.57109.1.S1_at--485--6691Chr09:9671612..9671636 (25 bp)
GTTCCACTGTACAAGCTGGCAGCTT
LOC_Os09g15840
Os.57109.1.S1_at--595--7191Chr09:9671535..9671559 (25 bp)
GGGTGACCCGTTGTTCAGGGAATAT
LOC_Os09g15840
Os.57109.1.S1_at--845--8991Chr09:9671487..9671511 (25 bp)
TGAAGGCACACCCTTGGTAGCCAAT
LOC_Os09g15840
Os.57109.1.S1_at--285--7851Chr09:9671472..9671496 (25 bp)
GGTAGCCAATTTTCTCGGTTCTGTG
LOC_Os09g15840
Os.57109.1.S1_at--249--3791Chr09:9671459..9671483 (25 bp)
CTCGGTTCTGTGGTGAATGCTCAAC
LOC_Os09g15840
Os.57109.1.S1_at--332--2311Chr09:9671431..9671455 (25 bp)
AAAGGCGTGAGATTTGGCAAGCTGC
LOC_Os09g15840
Os.57109.1.S1_at--749--10331Chr09:9671356..9671380 (25 bp)
TTTCACCACTATTTCCATCATTCAA
LOC_Os09g15840
Os.57109.1.S1_at--591--3111Chr09:9671318..9671342 (25 bp)
AATATGCCCCATGAGCTAAGATTAT
LOC_Os09g15840
Os.57109.1.S1_at--588--10191Chr09:9671287..9671311 (25 bp)
TATATTGTTCAATCTTCCCTAAAGG
LOC_Os09g15840
Target Sequence 
AGCAGATGTTGCTTACTGGTAGACATACAGAAAGCAAGATCATAGTGACCACTCATAGCAATAAAGTAGCTAAGCTGATT
TCCACCGTTCCACTGTACAAGCTGGCAGCTTTATCTGAGGATGATTGTTTAAAAATATTCTCTCAAAGGGCAATGACAGG
TCCGGGTGACCCGTTGTTCAGGGAATATGGAGAAGAAATCGTTAGAAGGTGTGAAGGCACACCCTTGGTAGCCAATTTTC
TCGGTTCTGTGGTGAATGCTCAACGACAAAGGCGTGAGATTTGGCAAGCTGCAAAGGATGAAGAAATGTGGAAGATAGAG
GAAGATTATCCCCAAGACAAAATTTCACCACTATTTCCATCATTCAAGATAATATATTATAATATGCCCCATGAGCTAAG
ATTATGCTTTGTATATTGTTCAATCTTCCCTAAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57109.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis