Browse Element(s) Details


Os.57121.1.S1_at

Description gb:AK110958.1
DB_XREF= gi:32996167
TID=Os.57121.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57121 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-A09, full insert sequence.
FL= gb:AK110958.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g144901/11calmodulin-binding heat-shock protein, putative, expressed
LOC_Os02g221901/11HGA1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g14450Os.53612.1.S1_at11/116+8115250..8118846Exo70 exocyst complex subunit family protein, expressed
LOC_Os06g14460Os.24295.1.A1_at10/116+8126438..8128338chromosome condensation family protein, putative, expressed
LOC_Os06g14470Os.10007.2.S1_a_at11/116+8128424..8133454DIP2 protein, putative, expressed
LOC_Os06g14470Os.10007.1.A1_a_at11/116+8128424..8133454DIP2 protein, putative, expressed
LOC_Os06g14470Os.15454.1.S1_x_at1/116+8128424..8133454DIP2 protein, putative, expressed
LOC_Os06g14480Os.47130.4.A1_x_at2/116+8139997..8140254retrotransposon protein, putative, unclassified
LOC_Os06g14490Os.54493.1.S1_at11/116+8141729..8146086calmodulin-binding heat-shock protein, putative, expressed
LOC_Os06g14490Os.57121.1.S1_at1/116+8141729..8146086calmodulin-binding heat-shock protein, putative, expressed
LOC_Os06g14500OsAffx.27635.1.S1_at10/116+8146960..8148150hypothetical protein
LOC_Os06g14500Os.6094.1.S1_at1/116+8146960..8148150hypothetical protein
LOC_Os06g14510Os.4697.1.S1_at11/116+8151445..8158386Glucose-6-phosphate isomerase, cytosolic B, putative, expressed
LOC_Os06g14510Os.57457.1.S1_x_at2/116+8151445..8158386Glucose-6-phosphate isomerase, cytosolic B, putative, expressed
LOC_Os06g14520NANA6+8162528..8162758hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57121.1.S1_at--377--3791Chr02:20872019..20872043 (25 bp)
CTCGTGCGCACTCCCAGAGATTAAA
NONE
Os.57121.1.S1_at--1114--8072Chr02:20871967..20871991 (25 bp)
GGAGCTATTTTCATTGCGACGAAGT
NONE
Os.57121.1.S1_at--677--10551Chr02:20871958..20871982 (25 bp)
TTCATTGCGACGAAGTTGGTCAGCT
NONE
Os.57121.1.S1_at--145--3391Chr02:20871938..20871962 (25 bp)
CAGCTCCAATTATTTATCTTTCTAT
NONE
Os.57121.1.S1_at--517--6331Chr02:20871876..20871900 (25 bp)
GATGCACTGCAGTATCAGTTATCGT
NONE
Os.57121.1.S1_at--347--10151Chr02:20871857..20871881 (25 bp)
TATCGTATGATGTAACTCTCTGTTT
NONE
Os.57121.1.S1_at--148--2551Chr02:20871844..20871868 (25 bp)
AACTCTCTGTTTGTACTGCTATGCT
NONE
Os.57121.1.S1_at--572--4872Chr06:8144652..8144671 (20 bp)
GCTATGCTTATTTAGTACTTCCTCC
LOC_Os06g14490
Os.57121.1.S1_at--271--6511Chr02:20871660..20871684 (25 bp)
GATATCGTCTCTATTTAGTTCTGCC
NONE
Os.57121.1.S1_at--958--1212Chr05:9277935..9277959 (25 bp)
AGTTCTGCCTTCTCAATCTAAAATA
NONE
Os.57121.1.S1_at--1019--1811Chr02:20871612..20871636 (25 bp)
ACGCTATTAATATCTAGGCTGAATT
NONE
Target Sequence 
CTCGTGCGCACTCCCAGAGATTAAAGGAGTGTAGGAGGATCTGATAAAAAGTGGAGCTATTTTCATTGCGACGAAGTTGG
TCAGCTCCAATTATTTATCTTTCTATATCTCTCTATTTTTTTTACAAAGTTAGGAAGGAGAAGGATGCACTGCAGTATCA
GTTATCGTATGATGTAACTCTCTGTTTGTACTGCTATGCTTATTTAGTACTTCCTCCGTTTCACGATGCAAGGCTTTCTA
GCATTGCTTATATTCATTTAGATGATAATGAATCTAAACATATAAATGTGTTATATTAACATCTGGGCAATGTTAGAAAG
TCTTATATTATGAAACGGAGGGAGTAGTAACATTTATCAGATATCGTCTCTATTTAGTTCTGCCTTCTCAATCTAAAATA
ATAAGATACGCTATTAATATCTAGGCTGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57121.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis