Browse Element(s) Details


Os.57172.1.S1_at

Description gb:AK111075.1
DB_XREF= gi:32996284
TID=Os.57172.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57172 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-175-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-E10, full insert sequence.
FL= gb:AK111075.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3061011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30580OsAffx.22947.1.S1_x_at11/112+18193147..18199508retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30580OsAffx.22947.2.S1_x_at6/112+18193147..18199508retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30580OsAffx.22947.3.S1_x_at6/112+18193147..18199508retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30580OsAffx.22947.5.S1_x_at1/112+18193147..18199508retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30590OsAffx.2810.1.S1_at11/112+18203314..18203817hypothetical protein
LOC_Os02g30600Os.5776.1.S1_at11/112+18205622..18206122expressed protein
LOC_Os02g30600Os.13482.1.S1_x_at4/112+18205622..18206122expressed protein
LOC_Os02g30610Os.57172.1.S1_at11/112+18213398..18214905expressed protein
LOC_Os02g30620Os.14990.1.S1_a_at11/112+18221542..18225610DnaJ domain containing protein, expressed
LOC_Os02g30620Os.14990.1.S1_at11/112+18221542..18225610DnaJ domain containing protein, expressed
LOC_Os02g30620Os.14990.2.S1_at11/112+18221542..18225610DnaJ domain containing protein, expressed
LOC_Os02g30624Os.12107.1.S1_a_at10/112+18225620..18229911U6 snRNA-associated Sm-like protein LSm6, putative, expressed
LOC_Os02g30630Os.1851.1.S1_at11/112+18230204..18232481Acetolactate synthase III, chloroplast precursor, putative, expressed
LOC_Os02g30640Os.25021.1.A1_at11/112+18233350..18235970expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57172.1.S1_at--1115--2851Chr02:18214318..18214342 (25 bp)
AAGTGAAACCGAATTGCTCCCATCC
LOC_Os02g30610
Os.57172.1.S1_at--532--9311Chr02:18214335..18214359 (25 bp)
TCCCATCCTAATCCTGAAATCAGCA
LOC_Os02g30610
Os.57172.1.S1_at--348--2791Chr02:18214404..18214428 (25 bp)
AAGAGGCAGAACATGATCACCCACA
LOC_Os02g30610
Os.57172.1.S1_at--187--571Chr02:18214428..18214452 (25 bp)
ATCCTACTCGGCACGGTCATTGTCA
LOC_Os02g30610
Os.57172.1.S1_at--1056--3591Chr02:18214445..18214469 (25 bp)
CATTGTCATGACTGCCGTCTGGCAA
LOC_Os02g30610
Os.57172.1.S1_at--101--3151Chr02:18214468..18214492 (25 bp)
AATTCAACGAGGTGTCGTTCCTCCT
LOC_Os02g30610
Os.57172.1.S1_at--302--10671Chr02:18214485..18214509 (25 bp)
TTCCTCCTCGCCGTGAAGAGAAAGC
LOC_Os02g30610
Os.57172.1.S1_at--885--10431Chr02:18214510..18214534 (25 bp)
TTAGCAATCCTTTCAAGTCCTTGGG
LOC_Os02g30610
Os.57172.1.S1_at--769--6271Chr02:18214614..18214638 (25 bp)
GATGTTACCCGGAATGATTTGCCAT
LOC_Os02g30610
Os.57172.1.S1_at--676--6511Chr02:18214629..18214653 (25 bp)
GATTTGCCATTGCTACTCATCAGCA
LOC_Os02g30610
Os.57172.1.S1_at--72--9011Chr02:18214837..18214861 (25 bp)
TGCACGTTTCTTCACTTGTTGTAAA
LOC_Os02g30610
Target Sequence 
AAGTGAAACCGAATTGCTCCCATCCTAATCCTGAAATCAGCAAGGAGGTCAAGCTAGGCGACGTAGCGAAAGACCTGAAC
AAAATCAAGAGGCAGAACATGATCACCCACATCCTACTCGGCACGGTCATTGTCATGACTGCCGTCTGGCAATTCAACGA
GGTGTCGTTCCTCCTCGCCGTGAAGAGAAAGCTTAGCAATCCTTTCAAGTCCTTGGGGGACTTGATCAAGAGTTCGCTGA
AGGGGGGAGGGAAGCCGATGATCGAGGCGCCACCGCTGCCTCCAGTCGGCGTCCCGGATGTTACCCGGAATGATTTGCCA
TTGCTACTCATCAGCAACGGCAATGGCAACAATGATGACTGAGAATTAGTGAGATAGTTATGCCCACAAAGGTATGAAAG
GGCAACTCCTCAATGGAAAATTGGAAATGCTGTTTGTTGGTTTCTTTATTTGTTGCAGACTTTTATGTTGATCTTGGTAT
CAAGTGGAAATGTGCACCTTTTTAAGGATTGAAAGCAAGTGCACGTTTCTTCACTTGTTGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57172.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis