Browse Element(s) Details


Os.57190.1.S1_at

Description gb:AK111112.1
DB_XREF= gi:32996321
TID=Os.57190.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.57190 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-176-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-176-B01, full insert sequence.
FL= gb:AK111112.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0919011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09140NANA6+4603421..4604035hypothetical protein
LOC_Os06g09150NANA6+4604515..4605856transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g09160OsAffx.30261.2.S1_s_at11/116+4606807..4607109hypothetical protein
LOC_Os06g09170Os.53571.1.S1_at11/116+4611262..4614893Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os06g09180Os.49853.1.S1_a_at11/116+4615609..4617146Protein kinase domain containing protein, expressed
LOC_Os06g09190Os.57190.1.S1_at11/116+4623189..4624518Protein kinase domain containing protein, expressed
LOC_Os06g09200OsAffx.10931.4.A1_at10/116+4628402..4628992hypothetical protein
LOC_Os06g09200OsAffx.10931.2.S1_s_at9/116+4628402..4628992hypothetical protein
LOC_Os06g09210Os.54734.1.S1_at3/116+4629849..4631544Cytochrome P450 family protein, expressed
LOC_Os06g09220Os.54734.1.S1_at10/116+4632667..4634470Cytochrome P450 family protein, expressed
LOC_Os06g09220OsAffx.15322.1.S1_x_at1/116+4632667..4634470Cytochrome P450 family protein, expressed
LOC_Os06g09230OsAffx.15330.1.S1_at11/116+4640564..4643874serine threonine kinase, putative, expressed
LOC_Os06g09230OsAffx.15330.1.S1_x_at11/116+4640564..4643874serine threonine kinase, putative, expressed
LOC_Os06g09240NANA6+4646955..4648522Flavonol 3-O-glucosyltransferase, putative, expressed
LOC_Os06g09250OsAffx.31228.1.S1_at2/116+4648582..4649154hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000165biological_processMAPKKK cascade
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004708molecular_functionMAP kinase kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57190.1.S1_at--561--3191Chr06:4623977..4624001 (25 bp)
CAATCGATCCCGCTGACGTGTTACT
LOC_Os06g09190
Os.57190.1.S1_at--1048--4731Chr06:4623988..4624012 (25 bp)
GCTGACGTGTTACTCCGACGGACCA
LOC_Os06g09190
Os.57190.1.S1_at--56--2711Chr06:4624048..4624072 (25 bp)
AAGCTTCGTCGGGTGTTGCCTGCAG
LOC_Os06g09190
Os.57190.1.S1_at--842--6671Chr06:4624062..4624086 (25 bp)
GTTGCCTGCAGATGAATCCGGCGAA
LOC_Os06g09190
Os.57190.1.S1_at--1053--9031Chr06:4624101..4624125 (25 bp)
TGCAGCTCATGGATCACCCGTTCGT
LOC_Os06g09190
Os.57190.1.S1_at--746--1891Chr06:4624127..4624151 (25 bp)
ACGTCCTCCGTATTTTCTCAAGAAT
LOC_Os06g09190
Os.57190.1.S1_at--998--8731Chr06:4624195..4624219 (25 bp)
TCTACTACAAAATACTTTCCTCCGT
LOC_Os06g09190
Os.57190.1.S1_at--868--3031Chr06:4624254..4624278 (25 bp)
AATCCAGTACAACGAGTCTACACAG
LOC_Os06g09190
Os.57190.1.S1_at--649--7151Chr06:4624269..4624293 (25 bp)
GTCTACACAGACTCGATTAGCTGTA
LOC_Os06g09190
Os.57190.1.S1_at--987--7011Chr06:4624411..4624435 (25 bp)
GTACTTACACATTTACCATCATATT
LOC_Os06g09190
Os.57190.1.S1_at--540--10371Chr06:4624443..4624467 (25 bp)
TTTTTTCTCACGTCATAGGTTGAGT
LOC_Os06g09190
Target Sequence 
CAATCGATCCCGCTGACGTGTTACTCCGACGGACCACCGGAGGCGCCGGCCACCGCCTCGCCGGAGTTCCGAAGCTTCGT
CGGGTGTTGCCTGCAGATGAATCCGGCGAAGCGGCCGTCCGCCGTGCAGCTCATGGATCACCCGTTCGTCACGTCCTCCG
TATTTTCTCAAGAATAATATAGTTATTTTTTAAAAAAATGATATTGGTATGACATATTTCTACTACAAAATACTTTCCTC
CGTCCAAAAAAAACTAATATAGAATTGGATTTAACATAATCCAGTACAACGAGTCTACACAGACTCGATTAGCTGTACTA
GATTGTGACAAATACAATCTAAGGTTGATTTTTTTTTTGGGACGGGGAGTACAACAGAAAATTTAAATTTAAAATCGACT
CATTTTAAGGGGAAAAAATCGATATTGTGAATGGTACTTACACATTTACCATCATATTTGTCTTTTTTTTTCTCACGTCA
TAGGTTGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57190.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis