Browse Element(s) Details


Os.57209.1.S1_at

Description gb:AK111141.1
DB_XREF= gi:32996350
TID=Os.57209.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57209 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-176-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-176-E02, full insert sequence.
FL= gb:AK111141.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3125011/11Gamma-thionins family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31200OsAffx.14065.1.S1_at9/114+18484783..18485961hypothetical protein
LOC_Os04g31210Os.5633.1.S1_at11/114+18488545..18493689Sodium Bile acid symporter family protein, expressed
LOC_Os04g31210Os.5633.2.S1_at11/114+18488545..18493689Sodium Bile acid symporter family protein, expressed
LOC_Os04g31210Os.5633.2.S1_x_at11/114+18488545..18493689Sodium Bile acid symporter family protein, expressed
LOC_Os04g31220OsAffx.19542.3.S1_x_at10/114+18495808..18500030retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g31230OsAffx.26267.1.S1_at11/114+18502172..18503090hypothetical protein
LOC_Os04g31240Os.10063.2.S1_at10/114+18503261..18507358esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os04g31240Os.27780.2.S1_a_at1/114+18503261..18507358esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os04g31250Os.57209.1.S1_at11/114+18508482..18509053Gamma-thionins family protein, expressed
LOC_Os04g31260NANA4+18512349..18513349hypothetical protein
LOC_Os04g31270OsAffx.14067.1.S1_at11/114+18515321..18520273ribosome-associated GTPase YjeQ family protein, expressed
LOC_Os04g31270Os.18054.1.S1_s_at11/114+18515321..18520273ribosome-associated GTPase YjeQ family protein, expressed
LOC_Os04g31290OsAffx.14069.1.S1_x_at10/114+18533150..18535080Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g31290OsAffx.14069.1.S1_at9/114+18533150..18535080Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57209.1.S1_at--1132--8471Chr04:18508524..18508548 (25 bp)
TGGCTCCAAGAAACGCCGCGTGTCG
LOC_Os04g31250
Os.57209.1.S1_at--315--4531Chr04:18508591..18508615 (25 bp)
GCCGCCGTCGCAGGTAATAACAACA
LOC_Os04g31250
Os.57209.1.S1_at--651--3031Chr04:18508620..18508644 (25 bp)
AATCGTACCAACTACCAGTGACCAG
LOC_Os04g31250
Os.57209.1.S1_at--696--7231Chr04:18508672..18508696 (25 bp)
GTCGCCGAGGCGTTGATCATCAGTC
LOC_Os04g31250
Os.57209.1.S1_at--477--9611Chr04:18508688..18508712 (25 bp)
TCATCAGTCGGCCACCATGGGAAGG
LOC_Os04g31250
Os.57209.1.S1_at--684--9051Chr04:18508750..18508774 (25 bp)
TGCATGGAGAAGACGCTGTACACGG
LOC_Os04g31250
Os.57209.1.S1_at--982--8531Chr04:18508814..18508838 (25 bp)
TGGAGCTCAACAACGGCGGCCACTG
LOC_Os04g31250
Os.57209.1.S1_at--416--4231Chr04:18508839..18508863 (25 bp)
CCGAGGCGGCTTCTTGTTTTTCAAG
LOC_Os04g31250
Os.57209.1.S1_at--1034--1411Chr04:18508862..18508886 (25 bp)
AGAAATGCAGCTGCTTCTTGTGCTT
LOC_Os04g31250
Os.57209.1.S1_at--1033--1231Chr04:18508889..18508913 (25 bp)
AGTTGTATTGTACCTGTACCGCGCG
LOC_Os04g31250
Os.57209.1.S1_at--782--2271Chr04:18508943..18508967 (25 bp)
AAATCCGTGTGGTCTAAGTTTGTGG
LOC_Os04g31250
Target Sequence 
TGGCTCCAAGAAACGCCGCGTGTCGATCATTCTCCTCGCCGTCGCCGTCGCCGTGGTTCCTCTCGCCGCCGCCGTCGCAG
GTAATAACAACATGCAAATCGTACCAACTACCAGTGACCAGCCGGCCGGCGGCGAGAGCACCGCCGTCGTCGCCGAGGCG
TTGATCATCAGTCGGCCACCATGGGAAGGCGGCGGGGTGGCCGGCGGCGCGCAGGCGATGAGCGAGTGCATGGAGAAGAC
GCTGTACACGGGGCCGTGCCTGGAGGCGCTGTGCACGGCGGCGTGCATCCTGGAGCTCAACAACGGCGGCCACTGCCGAG
GCGGCTTCTTGTTTTTCAAGAAATGCAGCTGCTTCTTGTGCTTCTAGTTGTATTGTACCTGTACCGCGCGCGCGCGCGCG
AGGGGCCGAGTAATTAGTTAAATCCGTGTGGTCTAAGTTTGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57209.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis