Browse Element(s) Details


Os.57211.1.S1_at

Description gb:AK111144.1
DB_XREF= gi:32996353
TID=Os.57211.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57211 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-176-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-176-E05, full insert sequence.
FL= gb:AK111144.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1388011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13860Os.24183.1.A1_at11/116+7697454..7702775Poly polymerase catalytic domain containing protein, expressed
LOC_Os06g13870OsAffx.4833.1.S1_x_at11/116+7708066..7709507U-box domain containing protein, expressed
LOC_Os06g13880Os.57211.1.S1_at11/116+7721729..7722355expressed protein
LOC_Os06g13890OsAffx.29675.2.S1_x_at11/116+7734542..7740580hypothetical protein
LOC_Os06g13890OsAffx.29675.3.S1_x_at8/116+7734542..7740580hypothetical protein
LOC_Os06g13890OsAffx.29675.3.S1_at7/116+7734542..7740580hypothetical protein
LOC_Os06g13890OsAffx.29675.4.S1_x_at6/116+7734542..7740580hypothetical protein
LOC_Os06g13890OsAffx.29675.1.S1_x_at5/116+7734542..7740580hypothetical protein
LOC_Os06g13900OsAffx.29742.5.S1_s_at8/116+7740818..7743758transposon protein, putative, unclassified, expressed
LOC_Os06g13900OsAffx.29742.2.S1_x_at6/116+7740818..7743758transposon protein, putative, unclassified, expressed
LOC_Os06g13900OsAffx.29742.1.S1_x_at6/116+7740818..7743758transposon protein, putative, unclassified, expressed
LOC_Os06g13900OsAffx.29742.3.S1_x_at4/116+7740818..7743758transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57211.1.S1_at--467--7271Chr06:7722299..7722323 (25 bp)
GTCCATTTGATCGATATTATTCTTG
LOC_Os06g13880
Os.57211.1.S1_at--754--2091Chr06:7722268..7722292 (25 bp)
ACATCTCATAATCTCATCCATGGCG
LOC_Os06g13880
Os.57211.1.S1_at--1141--2711Chr06:7722036..7722060 (25 bp)
AAGCAGGGCGCGTCGTGTCAAACGA
LOC_Os06g13880
Os.57211.1.S1_at--305--7451Chr06:7722022..7722046 (25 bp)
GTGTCAAACGAATGATCCCAACAAC
LOC_Os06g13880
Os.57211.1.S1_at--778--1791Chr06:7721986..7722010 (25 bp)
ACCCAAGCCGCCAAAGTAATCAATT
LOC_Os06g13880
Os.57211.1.S1_at--916--6391Chr06:7721952..7721976 (25 bp)
GATCGATAGCGAGACGTGCACAGTT
LOC_Os06g13880
Os.57211.1.S1_at--777--131Chr06:7721926..7721950 (25 bp)
ATTAATTAATTCTACCGCTGTGCTG
LOC_Os06g13880
Os.57211.1.S1_at--145--9971Chr06:7721914..7721938 (25 bp)
TACCGCTGTGCTGCACTGGAATAAT
LOC_Os06g13880
Os.57211.1.S1_at--1023--10051Chr06:7721829..7721853 (25 bp)
TAGTGTACTGTGTCCCTTTTATTTT
LOC_Os06g13880
Os.57211.1.S1_at--1130--2251Chr06:7721780..7721804 (25 bp)
AAATACTACCATCTCTGTTTTGTTT
LOC_Os06g13880
Os.57211.1.S1_at--95--8771Chr06:7721760..7721784 (25 bp)
TGTTTTTCTATTTGGCGTTGGTTTG
LOC_Os06g13880
Target Sequence 
GTCCATTTGATCGATATTATTCTTGCTTAGAACATCTCATAATCTCATCCATGGCGAGATCGGCGGCGGCGGCGATGCTC
ATGCTGTCGTTGCTGCTGCTGGGCTCGAGCCGCAGCTGGCCGCCGGTTGCCGCCGCGGCGAGGCCGCTGCTGCAGGGTGA
CGGCGGCGAGGTGGTGGCGCCGCCGGCCGGCGGCGGCGTCGGGGTCCTCGTGCTGCTGTCGTCGTCGCCGTCGCTGCGGC
ACTGGCTGCCGGTGCTGGAGATGAAGCAGGGCGCGTCGTGTCAAACGAATGATCCCAACAACGTTAACTGCCCACCCAAG
CCGCCAAAGTAATCAATTCAAGAGGGAGATCGATAGCGAGACGTGCACAGTTAATTAATTAATTCTACCGCTGTGCTGCA
CTGGAATAATATGCTGGAGAAAAATTCATTTCGTTTTTTTAAATCAAGATGGAGCAAATTTCCTTTTTTTTAGTGTACTG
TGTCCCTTTTATTTTGTTGATGTTAATTCATTTCTTAATAAATACTACCATCTCTGTTTTGTTTTTCTATTTGGCGTTGG
TTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57211.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis