Browse Element(s) Details


Os.57213.1.S1_at

Description gb:AK111146.1
DB_XREF= gi:32996355
TID=Os.57213.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57213 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-176-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-176-E08, full insert sequence.
FL= gb:AK111146.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3256011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32520OsAffx.11285.1.S1_at11/111+18163752..18164312hypothetical protein
LOC_Os01g32530Os.26886.1.S1_x_at4/111+18167816..18170579transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32530Os.26886.3.S1_x_at3/111+18167816..18170579transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32540NANA1+18173084..18173380hypothetical protein
LOC_Os01g32550OsAffx.16467.1.S1_at8/111+18173655..18176696hypothetical protein
LOC_Os01g32550Os.26886.6.S1_s_at6/111+18173655..18176696hypothetical protein
LOC_Os01g32550Os.26886.2.S1_s_at5/111+18173655..18176696hypothetical protein
LOC_Os01g32560Os.57213.1.S1_at11/111+18186617..18187489expressed protein
LOC_Os01g32574Os.14491.2.S1_x_at1/111+18194418..18197244transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32574Os.47463.1.S1_x_at1/111+18194418..18197244transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32590NANA1+18197383..18198057transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32600NANA1+18201102..18204183transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32610Os.5711.1.S1_at11/111+18208627..18212333expressed protein
LOC_Os01g32610OsAffx.30488.1.S1_at1/111+18208627..18212333expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57213.1.S1_at--424--8931Chr01:18186884..18186908 (25 bp)
TGACCACCATGCTCTGGCACATGTG
LOC_Os01g32560
Os.57213.1.S1_at--1156--1831Chr01:18186853..18186877 (25 bp)
ACGCTGCTCCTGCATGGATCGATCA
LOC_Os01g32560
Os.57213.1.S1_at--233--831Chr01:18186840..18186864 (25 bp)
ATGGATCGATCAACCCTTTTGTCTT
LOC_Os01g32560
Os.57213.1.S1_at--428--3671Chr01:18186825..18186849 (25 bp)
CTTTTGTCTTTCTTGCCTGCTTAAT
LOC_Os01g32560
Os.57213.1.S1_at--369--9692Chr02:6697158..6697334 (25 bp)
TCAACTTCTCTTCTTTTGTTTTCTC
NONE
Os.57213.1.S1_at--424--6811Chr01:18186779..18186803 (25 bp)
GTTTTCTCAACTTCTCTGTAATTAG
LOC_Os01g32560
Os.57213.1.S1_at--907--10091Chr01:18186754..18186778 (25 bp)
TAGGCAGCCAGCTAGATAGGGCTTT
LOC_Os01g32560
Os.57213.1.S1_at--602--8191Chr01:18186724..18186748 (25 bp)
GGAAGAATCTCCCAATCCATTCCTC
LOC_Os01g32560
Os.57213.1.S1_at--161--91Chr01:18186706..18186730 (25 bp)
ATTCCTCCTCCTAGCGGTAAGAGGG
LOC_Os01g32560
Os.57213.1.S1_at--521--9591Chr01:18186672..18186696 (25 bp)
TCTTGGCATACAAAGCCCTATCATG
LOC_Os01g32560
Os.57213.1.S1_at--717--10151Chr01:18186654..18186678 (25 bp)
TATCATGCCTCACCACTTTATTTAT
LOC_Os01g32560
Target Sequence 
TGACCACCATGCTCTGGCACATGTGCTCGCCACGCTGCTCCTGCATGGATCGATCAACCCTTTTGTCTTTCTTGCCTGCT
TAATCCTCTCAACTTCTCTTCTTTTGTTTTCTCAACTTCTCTGTAATTAGTAGGCAGCCAGCTAGATAGGGCTTTGTATT
GGAAGAATCTCCCAATCCATTCCTCCTCCTAGCGGTAAGAGGGGATCGAGATTCTTGGCATACAAAGCCCTATCATGCCT
CACCACTTTATTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57213.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis