Browse Element(s) Details


OsAffx.11285.1.S1_at

Description tigr:9629.m03037
TID=OsAffx.11285.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3252011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32490OsAffx.20020.1.S1_x_at1/111+18144621..18145564hypothetical protein
LOC_Os01g32500Os.20851.1.A1_x_at2/111+18147056..18153265retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g32500Os.55580.1.S1_at1/111+18147056..18153265retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g32510OsAffx.8916.1.S1_x_at11/111+18154010..18158473transposon protein, putative, unclassified
LOC_Os01g32510OsAffx.8916.1.S1_at11/111+18154010..18158473transposon protein, putative, unclassified
LOC_Os01g32510OsAffx.13772.1.S1_at2/111+18154010..18158473transposon protein, putative, unclassified
LOC_Os01g32510OsAffx.19035.2.S1_at1/111+18154010..18158473transposon protein, putative, unclassified
LOC_Os01g32510OsAffx.15536.1.S1_x_at1/111+18154010..18158473transposon protein, putative, unclassified
LOC_Os01g32510OsAffx.13772.1.S1_x_at1/111+18154010..18158473transposon protein, putative, unclassified
LOC_Os01g32510OsAffx.19035.1.S1_x_at1/111+18154010..18158473transposon protein, putative, unclassified
LOC_Os01g32510OsAffx.26939.1.S1_at1/111+18154010..18158473transposon protein, putative, unclassified
LOC_Os01g32520OsAffx.11285.1.S1_at11/111+18163752..18164312hypothetical protein
LOC_Os01g32530Os.26886.1.S1_x_at4/111+18167816..18170579transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32530Os.26886.3.S1_x_at3/111+18167816..18170579transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32540NANA1+18173084..18173380hypothetical protein
LOC_Os01g32550OsAffx.16467.1.S1_at8/111+18173655..18176696hypothetical protein
LOC_Os01g32550Os.26886.6.S1_s_at6/111+18173655..18176696hypothetical protein
LOC_Os01g32550Os.26886.2.S1_s_at5/111+18173655..18176696hypothetical protein
LOC_Os01g32560Os.57213.1.S1_at11/111+18186617..18187489expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11285.1.S1_at--221--3276Chr11:9297330..9297357 (25 bp)
CAACATATACTCTTAATGACTTTCT
NONE
OsAffx.11285.1.S1_at--781--10332Chr09:15557868..15557891 (24 bp)
TTTAATGCATGGCTCTCTATTCTTT
NONE
OsAffx.11285.1.S1_at--364--9771Chr01:18164059..18164083 (25 bp)
TAATGCATGGCTCTCTATTCTTTCA
LOC_Os01g32520
OsAffx.11285.1.S1_at--819--3011Chr01:18164058..18164082 (25 bp)
AATGCATGGCTCTCTATTCTTTCAC
LOC_Os01g32520
OsAffx.11285.1.S1_at--96--651Chr01:18164057..18164081 (25 bp)
ATGCATGGCTCTCTATTCTTTCACA
LOC_Os01g32520
OsAffx.11285.1.S1_at--702--9051Chr01:18164056..18164080 (25 bp)
TGCATGGCTCTCTATTCTTTCACAC
LOC_Os01g32520
OsAffx.11285.1.S1_at--868--855Chr07:25675753..25675773 (21 bp)
ATGGCTCTCTATTCTTTCACACAAG
NONE
OsAffx.11285.1.S1_at--885--8312Chr04:4507743..4507764 (22 bp)
GGCTCTCTATTCTTTCACACAAGAT
NONE
OsAffx.11285.1.S1_at--988--4815Chr07:25675753..25675776 (24 bp)
GCTCTCTATTCTTTCACACAAGATT
NONE
OsAffx.11285.1.S1_at--888--10314Chr04:30837029..30837049 (21 bp)
TTTCACACAAGATTGACTACATGGG
NONE
OsAffx.11285.1.S1_at--555--7591Chr01:18163782..18164041 (25 bp)
GGGCATCGAGAAAGCTCTGTTGAGT
LOC_Os01g32520
Target Sequence 
CAACATATACTCTTAATGACTTTCTCGGATTTAATGCATGGCTCTCTATTCTTTCACACAAGATTGACTACATGGGCATC
GAGAAAGCTCTGTTGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11285.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis