Browse Element(s) Details


Os.57300.1.S1_at

Description gb:AK111263.1
DB_XREF= gi:32996472
TID=Os.57300.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57300 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-180-F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-180-F04, full insert sequence.
FL= gb:AK111263.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3874010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38670Os.50591.1.S1_at3/117+23221421..23222113hypothetical protein
LOC_Os07g38680Os.47130.4.A1_x_at4/117+23224138..23224461retrotransposon protein, putative, unclassified
LOC_Os07g38690Os.55353.1.S1_at11/117+23225690..23226285Ubiquitin-like protein SMT3, putative, expressed
LOC_Os07g38700OsAffx.5569.1.S1_at11/117+23226628..23227611hypothetical protein
LOC_Os07g38710OsAffx.28815.1.S1_at11/117+23232050..23233047hypothetical protein
LOC_Os07g38720OsAffx.28816.1.S1_at11/117+23233955..23234500hypothetical protein
LOC_Os07g38730Os.9504.1.S1_at11/117+23242103..23245524Tubulin alpha-1 chain, putative, expressed
LOC_Os07g38740Os.57300.1.S1_at10/117+23246386..23246953expressed protein
LOC_Os07g38750OsAffx.16617.1.S1_at11/117+23249643..23250590AP2 domain containing protein
LOC_Os07g38760OsAffx.5570.1.S1_at11/117+23255051..23263600HEAT repeat family protein, expressed
LOC_Os07g38770NANA7+23266647..23268005transposon protein, putative, Pong sub-class
LOC_Os07g38780OsAffx.11235.1.S1_at1/117+23268550..23269841transposon protein, putative, Pong sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57300.1.S1_at--1112--9611Chr07:23246862..23246886 (25 bp)
TCATGCCCAAGTACCCAATCTGGAG
LOC_Os07g38740
Os.57300.1.S1_at--87--8531Chr07:23246826..23246850 (25 bp)
TGGACCTCAGGCTCATCTGTGACGA
LOC_Os07g38740
Os.57300.1.S1_at--21--5971Chr07:23246761..23246785 (25 bp)
GAGAAGGTATTCGAGCGGCTAAGCC
LOC_Os07g38740
Os.57300.1.S1_at--688--1111Chr07:23246677..23246701 (25 bp)
AGTGTTAGCCTCGACGTTGCCTGGG
LOC_Os07g38740
Os.57300.1.S1_at--761--6211Chr07:23246634..23246658 (25 bp)
GAGGCTGTATGTCTGATGTCACTAT
LOC_Os07g38740
Os.57300.1.S1_at--769--8071Chr07:23246608..23246632 (25 bp)
GGAGCAGCTCCAATGTGTGCAGAAA
LOC_Os07g38740
Os.57300.1.S1_at--1059--6071Chr07:23246576..23246600 (25 bp)
GAGTATATCGGAGACAGCACACTGG
LOC_Os07g38740
Os.57300.1.S1_at--264--7672Chr07:23246463..23246487 (25 bp)
GGGTTGAACATATTCGAGCCCAATC
LOC_Os07g38740
Os.57300.1.S1_at--384--9891NONE
TACATTCTCCCCTTAACTTTTCTTG
NONE
Os.57300.1.S1_at--726--3671Chr07:23246414..23246438 (25 bp)
CTTTTCTTGCTGTATGTGAGTCCTA
LOC_Os07g38740
Os.57300.1.S1_at--351--6111Chr07:23246397..23246421 (25 bp)
GAGTCCTATAAATCGATGTGCACAC
LOC_Os07g38740
Target Sequence 
TCATGCCCAAGTACCCAATCTGGAGACTGGAGCCACTGGACCTCAGGCTCATCTGTGACGAGGAGCCAGTCGAGAGAGTT
GGAGTCCGGGAGAGCCCCCATGAGAAGGTATTCGAGCGGCTAAGCCGGGATGGTGCCATCTCCACCGTCGCCGCCACCGT
CACCGTCACCGTCACCGCCGCTGCCAGTGTTAGCCTCGACGTTGCCTGGGTGTCCGACCTCATCAACTGAGGCTGTATGT
CTGATGTCACTATTGGAGCAGCTCCAATGTGTGCAGAAATCGAACTGAGTATATCGGAGACAGCACACTGGGAGAGTCGA
TTGTTGTGTGTCAGATAGCAAAATCGATCTCCAAAATTGAGTTAGTGTTAGACAATTAAAGTATTATTTGTTGCTGATGG
GGTTGAACATATTCGAGCCCAATCAAATAATTTACATTCTCCCCTTAACTTTTCTTGCTGTATGTGAGTCCTATAAATCG
ATGTGCACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57300.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis