Browse Element(s) Details


Os.57398.1.S1_at

Description gb:AK111456.1
DB_XREF= gi:32996665
TID=Os.57398.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57398 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-183-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-183-C05, full insert sequence.
FL= gb:AK111456.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2452011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24490NANA9+14582905..14585280Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g24500OsAffx.30002.1.S1_at11/119+14598025..14599146hypothetical protein
LOC_Os09g24510OsAffx.17875.1.S1_at11/119+14601760..14603777hypothetical protein
LOC_Os09g24520Os.57398.1.S1_at11/119+14602950..14606124pentatricopeptide, putative, expressed
LOC_Os09g24530OsAffx.6386.1.S1_at11/119+14606620..14608847Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative, expressed
LOC_Os09g24540Os.12380.1.S1_at11/119+14609815..14612265PPIC-type PPIASE domain containing protein, expressed
LOC_Os09g24550OsAffx.17876.1.S1_at11/119+14615985..14616249hypothetical protein
LOC_Os09g24560OsAffx.30003.1.S1_s_at11/119+14616938..14618006No apical meristem protein
LOC_Os09g24560OsAffx.13887.1.S1_at1/119+14616938..14618006No apical meristem protein
LOC_Os09g24570Os.52370.1.S1_at11/119+14628692..14631858PsRT17-1 like protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57398.1.S1_at--805--5671Chr09:14603437..14603653 (25 bp)
GACATCTTGTGCAGTGTGAACAACT
LOC_Os09g24520
Os.57398.1.S1_at--16--2211Chr09:14603267..14603291 (25 bp)
ACAACAATTATCCATCAGGTCACGA
LOC_Os09g24520
Os.57398.1.S1_at--584--531Chr09:14603258..14603282 (25 bp)
ATCCATCAGGTCACGAAAACTTACT
LOC_Os09g24520
Os.57398.1.S1_at--1049--2412Chr09:14603243..14603267 (25 bp)
AAAACTTACTACATCCGTCTCATAA
LOC_Os09g24520
Os.57398.1.S1_at--287--2891Chr09:14603215..14603239 (25 bp)
AAGGGATTTTGCTCGTACAACTACA
LOC_Os09g24520
Os.57398.1.S1_at--343--4811Chr09:14603205..14603229 (25 bp)
GCTCGTACAACTACATGCATGGGCA
LOC_Os09g24520
Os.57398.1.S1_at--90--8651Chr09:14603186..14603210 (25 bp)
TGGGCAAAATGCCTTATATTTGGGA
LOC_Os09g24520
Os.57398.1.S1_at--596--7831Chr09:14603157..14603181 (25 bp)
GGTAATATTGTTTTGGCATGCCTTA
LOC_Os09g24520
Os.57398.1.S1_at--637--8251Chr09:14603143..14603167 (25 bp)
GGCATGCCTTAAGTCAAACATTTGA
LOC_Os09g24520
Os.57398.1.S1_at--27--5551Chr09:14603120..14603144 (25 bp)
GAAACTTTAAACATGCATATCTCTT
LOC_Os09g24520
Os.57398.1.S1_at--117--6571Chr09:14603056..14603080 (25 bp)
GATTCATTACGGAAAGCACTTTCAT
LOC_Os09g24520
Target Sequence 
GACATCTTGTGCAGTGTGAACAACTGAAACCATCAAAGGCTGAAATGGTAGGAGCAATGCTGATGCTGCCATTAGTAATC
GCGGGTTCTCATTCCGAAGTGCTCTTGATAAACACTGCACAAAACACAGGCTTGTCACAATGGCATGATTTGCATCAGTC
AGATAATGTAACAACAATTATCCATCAGGTCACGAAAACTTACTACATCCGTCTCATAATATAAGGGATTTTGCTCGTAC
AACTACATGCATGGGCAAAATGCCTTATATTTGGGATAGAGGTAATATTGTTTTGGCATGCCTTAAGTCAAACATTTGAA
ACTTTAAACATGCATATCTCTTTATATATGTTTAGATTGGATCATAAAAAATGTATGTAGAGATTCATTACGGAAAGCAC
TTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57398.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis