Browse Element(s) Details


Os.5740.1.S1_at

Description gb:AK101730.1
DB_XREF= gi:32986939
TID=Os.5740.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.5740 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative NAD-malate dehydrogenase (B1088C09.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033061G08, full insert sequence.
FL= gb:AK101730.1 gb:AK058753.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6138011/11Malate dehydrogenase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61310OsAffx.23881.1.S1_x_at11/111+35800544..35801182hypothetical protein
LOC_Os01g61320Os.8865.4.S1_at11/111+35804267..35806360expressed protein
LOC_Os01g61320Os.8865.4.S1_x_at11/111+35804267..35806360expressed protein
LOC_Os01g61320Os.8865.2.S1_x_at11/111+35804267..35806360expressed protein
LOC_Os01g61330Os.37113.1.S1_at11/111+35806920..35809034MSP domain containing protein, expressed
LOC_Os01g61340OsAffx.23882.1.S1_at10/111+35815856..35817124hypothetical protein
LOC_Os01g61350Os.24385.1.S1_at11/111+35818759..35819770Glutaredoxin family protein, expressed
LOC_Os01g61360OsAffx.2378.1.S1_at11/111+35822814..35823216hypothetical protein
LOC_Os01g61370Os.29834.2.S1_at10/111+35823833..35825262expressed protein
LOC_Os01g61380Os.5740.1.S1_at11/111+35825868..35828594Malate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g61390Os.34655.1.S1_at11/111+35828845..35831901transposon protein, putative, unclassified, expressed
LOC_Os01g61400Os.19035.1.S1_at10/111+35832362..35835369expressed protein
LOC_Os01g61410Os.47958.1.A1_x_at11/111+35835716..35839960Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os01g61410Os.25236.1.S1_x_at10/111+35835716..35839960Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os01g61420Os.47928.1.S2_at11/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61420Os.47928.1.S3_at11/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61420Os.47928.1.S1_at11/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61420Os.27437.1.A1_x_at10/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61430Os.7716.1.S1_at11/111+35845527..35846372expressed protein
LOC_Os01g61440Os.32153.1.S1_at10/111+35852376..35854441expressed protein
LOC_Os01g61440Os.32153.2.S1_x_at6/111+35852376..35854441expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0042579cellular_componentmicrobody
GO:0016615molecular_functionmalate dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5740.1.S1_at--506--4451Chr01:35828071..35828095 (25 bp)
GCCTATGCAGCTGCCAGATTTGTTG
LOC_Os01g61380
Os.5740.1.S1_at--41--1271Chr01:35828086..35828110 (25 bp)
AGATTTGTTGAGTCATCCCTCCGTG
LOC_Os01g61380
Os.5740.1.S1_at--391--9291Chr01:35828105..35828129 (25 bp)
TCCGTGCATTGGCTGGTGATCCAGA
LOC_Os01g61380
Os.5740.1.S1_at--792--7751Chr01:35828119..35828143 (25 bp)
GGTGATCCAGATGTTTACGAGTGCA
LOC_Os01g61380
Os.5740.1.S1_at--840--4771Chr01:35828169..35828193 (25 bp)
GCTGCTGTTCTTTGCATCTAGGGTT
LOC_Os01g61380
Os.5740.1.S1_at--578--8411Chr01:35828265..35828289 (25 bp)
GGCCCTTGAGTCATTGAAGCCTGAG
LOC_Os01g61380
Os.5740.1.S1_at--1007--171Chr01:35828437..35828461 (25 bp)
ATTTTTCGTGTCTAGTTGTTGCTTG
LOC_Os01g61380
Os.5740.1.S1_at--486--9071Chr01:35828456..35828480 (25 bp)
TGCTTGTTTAGTCTCTTCTGATCAC
LOC_Os01g61380
Os.5740.1.S1_at--414--7511Chr01:35828489..35828513 (25 bp)
GTGGATGCCCAAACTGTTGCCTGTT
LOC_Os01g61380
Os.5740.1.S1_at--670--3871Chr01:35828502..35828526 (25 bp)
CTGTTGCCTGTTTTCATGAGCTATT
LOC_Os01g61380
Os.5740.1.S1_at--224--691Chr01:35828517..35828541 (25 bp)
ATGAGCTATTTGACCCTTGTGCCTG
LOC_Os01g61380
Target Sequence 
GCCTATGCAGCTGCCAGATTTGTTGAGTCATCCCTCCGTGCATTGGCTGGTGATCCAGATGTTTACGAGTGCACATTTGT
TCAATCTGAATTAACTGAGCTGCTGTTCTTTGCATCTAGGGTTAAGCTTGGTAAGAATGGTGTTGAGTCCATCATTTCTN
CCGACCTTGAGGGAGTGACTGAATATGAGGCCAAGGCCCTTGAGTCATTGAAGCCTGAGTTGAAGGCCAGCATTGAGAAG
GGCATCGAGTTNGTCCACAAACAGCAGGCTGCCGCTACTTCTTGNAAGTGTGGAGAATGACTATCGGCATGAGAGAAGAT
AATAAATGCAGAAATGGTTCTCAATAGCTTTTAGTTTTGAAGGCGGAATTTTTCGTGTCTAGTTGTTGCTTGTTTAGTCT
CTTCTGATCACATGAGGGCGTGGATGCCCAAACTGTTGCCTGTTTTCATGAGCTATTTGACCCTTGTGCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5740.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis