Browse Element(s) Details


Os.57403.1.S1_at

Description gb:AK111464.1
DB_XREF= gi:32996673
TID=Os.57403.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57403 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-183-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-183-D04, full insert sequence.
FL= gb:AK111464.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3405011/11expressed protein
LOC_Os01g065701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34020NANA1+19054772..19054993transposon protein, putative, unclassified
LOC_Os01g34030OsAffx.22711.3.S1_x_at1/111+19058064..19062002retrotransposon protein, putative, unclassified
LOC_Os01g34030OsAffx.20380.1.S1_x_at1/111+19058064..19062002retrotransposon protein, putative, unclassified
LOC_Os01g34030OsAffx.22711.1.S1_x_at1/111+19058064..19062002retrotransposon protein, putative, unclassified
LOC_Os01g34030OsAffx.20380.2.S1_at1/111+19058064..19062002retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.21171.1.S1_at11/111+19062537..19068571retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.21171.3.S1_x_at4/111+19062537..19068571retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.21171.4.S1_x_at3/111+19062537..19068571retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.20729.1.S1_x_at2/111+19062537..19068571retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.21171.4.S1_at1/111+19062537..19068571retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.21171.5.S1_x_at1/111+19062537..19068571retrotransposon protein, putative, unclassified
LOC_Os01g34050Os.57403.1.S1_x_at11/111+19076131..19077327expressed protein
LOC_Os01g34050Os.57403.1.S1_at11/111+19076131..19077327expressed protein
LOC_Os01g34050OsAffx.21170.1.S1_at1/111+19076131..19077327expressed protein
LOC_Os01g34060Os.15338.1.S1_a_at11/111+19082123..19083747myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g34080Os.9508.1.S1_at11/111+19090117..19101323Armadillo/beta-catenin-like repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57403.1.S1_at--670--6211Chr01:19076898..19076922 (25 bp)
GAGGCGGAGGCATGTGTCCCCTCCT
LOC_Os01g34050
Os.57403.1.S1_at--762--8011Chr01:19076903..19076927 (25 bp)
GGAGGCATGTGTCCCCTCCTGACGA
LOC_Os01g34050
Os.57403.1.S1_at--455--8591Chr01:19076910..19076934 (25 bp)
TGTGTCCCCTCCTGACGACCGGAGT
LOC_Os01g34050
Os.57403.1.S1_at--700--3951Chr01:19076929..19076953 (25 bp)
CGGAGTTGACGGGAGACCGCGTCGC
LOC_Os01g34050
Os.57403.1.S1_at--341--5591Chr01:19077203..19077227 (25 bp)
GAAATAAATTTTGCTCCGCTACCCG
LOC_Os01g34050
Os.57403.1.S1_at--955--332Chr01:19077206..19077230 (25 bp)
ATAAATTTTGCTCCGCTACCCGTGT
LOC_Os01g34050
Os.57403.1.S1_at--145--4131Chr01:19077219..19077243 (25 bp)
CGCTACCCGTGTCCAAAAGCATAGG
LOC_Os01g34050
Os.57403.1.S1_at--262--7271Chr01:19077229..19077253 (25 bp)
GTCCAAAAGCATAGGGTCACGCCCA
LOC_Os01g34050
Os.57403.1.S1_at--73--1977Chr09:17194785..17194806 (22 bp)
ACTGTGGGCTTCGTTTCCTTCATCA
NONE
Os.57403.1.S1_at--925--8632Chr01:19077257..19077281 (25 bp)
TGGGCTTCGTTTCCTTCATCAGTGT
LOC_Os01g34050
Os.57403.1.S1_at--750--4912Chr01:19077260..19077284 (25 bp)
GCTTCGTTTCCTTCATCAGTGTCTC
LOC_Os01g34050
Target Sequence 
GAGGCGGAGGCATGTGTCCCCTCCTGACGACCGGAGTTGACGGGAGACCGCGTCGCCACCCCCCGAAGCCCACCGCCGCG
GACTTCATGTCTCCCACCGCCGCGCCAGCCGCTCCCCCCGGGGATGCCTCCCTCCGCCTCACCAGCCACCGCCACCGGGG
ACACATCCCACCGCCGTGCCAGCCACTGCCGCCTGGGACGCCTCCGGCTGCCGTGCCAGCCGCCGCCGCGAGGGGTTGGA
GAGAGCGAAGCGGTCGAGGGCTAGGCATCCGCCTGCGCGCTGGGTTGGAGAGAAGGGTAGGTGAGAAATAAATTTTGCTC
CGCTACCCGTGTCCAAAAGCATAGGGTCACGCCCACTGTGGGCTTCGTTTCCTTCATCAGTGTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57403.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis