Browse Element(s) Details


Os.57436.1.S1_x_at

Description gb:AY224578.1
DB_XREF= gi:29370893
TID=Os.57436.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57436 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) isolate 29968 unknown mRNA.
PROD=unknown
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4390010/11Down syndrome critical region protein 5 homolog, putative, expressed
LOC_Os03g439104/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43870OsAffx.3505.1.S1_at11/113+24563639..24564169hypothetical protein
LOC_Os03g43880OsAffx.25525.1.S1_at11/113+24570524..24572122Patatin-like phospholipase family protein, expressed
LOC_Os03g43890Os.37345.1.S1_s_at11/113+24575491..24583690WD-40 repeat protein MSI1, putative, expressed
LOC_Os03g43890Os.37345.1.S1_at11/113+24575491..24583690WD-40 repeat protein MSI1, putative, expressed
LOC_Os03g43900OsAffx.3506.1.S1_at11/113+24584577..24588899Down syndrome critical region protein 5 homolog, putative, expressed
LOC_Os03g43900Os.57436.1.S1_x_at10/113+24584577..24588899Down syndrome critical region protein 5 homolog, putative, expressed
LOC_Os03g43900Os.57436.1.S1_at8/113+24584577..24588899Down syndrome critical region protein 5 homolog, putative, expressed
LOC_Os03g43900Os.27446.3.S1_x_at1/113+24584577..24588899Down syndrome critical region protein 5 homolog, putative, expressed
LOC_Os03g43910Os.22835.1.S1_at10/113+24592377..24595650expressed protein
LOC_Os03g43910Os.57436.1.S1_x_at4/113+24592377..24595650expressed protein
LOC_Os03g43910Os.53017.1.S1_at1/113+24592377..24595650expressed protein
LOC_Os03g43920OsAffx.25526.1.S1_at11/113+24597465..24598804hypothetical protein
LOC_Os03g43930Os.14126.1.S1_at11/113+24606047..24611849class III HD-Zip protein 4, putative, expressed
LOC_Os03g43940OsAffx.25527.1.S1_at11/113+24613422..24613730hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57436.1.S1_x_at--457--5371Chr03:24586727..24586751 (25 bp)
GAAGACGTCGTTGCCATAAAGCAGA
LOC_Os03g43900
Os.57436.1.S1_x_at--77--9051NONE
TGCAGCATCTCATACTGGGACGATT
NONE
Os.57436.1.S1_x_at--1055--7051Chr03:24584893..24584917 (25 bp)
GTAATGCAGTTCTCACACATTTTAA
LOC_Os03g43900
Os.57436.1.S1_x_at--885--3852Chr03:24593005..24593029 (25 bp)
CTGAACAATGCTTTGCGGAGGTGTC
LOC_Os03g43910
Os.57436.1.S1_x_at--514--6131Chr03:24584843..24584867 (25 bp)
GAGGTGTCTAATGACTTTGCTGGTA
LOC_Os03g43900
Os.57436.1.S1_x_at--390--10272Chr03:24584828..24584852 (25 bp)
TTTGCTGGTAAAACTCGTCTTCTCA
LOC_Os03g43900
Os.57436.1.S1_x_at--931--10571Chr03:24584809..24584833 (25 bp)
TTCTCAAGTCCATGAAGGCTGATCT
LOC_Os03g43900
Os.57436.1.S1_x_at--897--8331Chr03:24584793..24584817 (25 bp)
GGCTGATCTTGACCATATTTTCCTG
LOC_Os03g43900
Os.57436.1.S1_x_at--1033--6152Chr03:24584646..24584670 (25 bp)
GAGGTTAGCGGCAACATATCCAGAT
LOC_Os03g43900
Os.57436.1.S1_x_at--279--2092Chr03:24584633..24584657 (25 bp)
ACATATCCAGATGCTTTTCCTACTG
LOC_Os03g43900
Os.57436.1.S1_x_at--242--10671Chr03:24584617..24584641 (25 bp)
TTCCTACTGGCGCAATGGCAGAGAC
LOC_Os03g43900
Target Sequence 
GAAGACGTCGTTGCCATAAAGCAGATGCAGCATCTCATACTGGGACGATTGCAAGATAGTAATGCAGTTCTCACACATTT
TAATGAATACTCTGAACAATGCTTTGCGGAGGTGTCTAATGACTTTGCTGGTAAAACTCGTCTTCTCAAGTCCATGAAGG
CTGATCTTGACCATATTTTCCTGAAGTTGAGAGGCATGAAATCGAGGTTAGCGGCAACATATCCAGATGCTTTTCCTACT
GGCGCAATGGCAGAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57436.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis