Browse Element(s) Details

Os.57454.1.S1_x_at

Description

gb:D42816
DB_XREF= gi:3107897
DB_XREF=D42816
CLONE=320
TID=Os.57454.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57454 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for ribosomal protein S12 (320 gene), partial sequence
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g61820	7/11	ribosomal protein S23 containing protein, expressed
LOC_Os10g20990	1/11	Ribosomal protein S12 containing protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g61780	Os.14624.2.S1_x_at	11/11	1	+	36059514..36070531	V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780	Os.14624.1.S1_a_at	11/11	1	+	36059514..36070531	V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780	Os.14624.1.S1_x_at	11/11	1	+	36059514..36070531	V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780	Os.14624.1.S1_at	11/11	1	+	36059514..36070531	V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61800	OsAffx.21767.1.S1_at	6/11	1	+	36079339..36081044	ZmEBE-1 protein, putative, expressed
LOC_Os01g61810	Os.22637.1.S1_a_at	11/11	1	+	36083183..36085512	CCAAT-binding transcription factor subunit HAP3A, putative, expressed
LOC_Os01g61820	Os.26532.1.S1_a_at	11/11	1	+	36086918..36091915	ribosomal protein S23 containing protein, expressed
LOC_Os01g61820	Os.26532.1.S1_x_at	11/11	1	+	36086918..36091915	ribosomal protein S23 containing protein, expressed
LOC_Os01g61820	Os.26532.2.S1_x_at	11/11	1	+	36086918..36091915	ribosomal protein S23 containing protein, expressed
LOC_Os01g61820	Os.57454.1.S1_x_at	7/11	1	+	36086918..36091915	ribosomal protein S23 containing protein, expressed
LOC_Os01g61820	OsAffx.28576.2.S1_x_at	1/11	1	+	36086918..36091915	ribosomal protein S23 containing protein, expressed
LOC_Os01g61820	OsAffx.22334.1.S1_at	1/11	1	+	36086918..36091915	ribosomal protein S23 containing protein, expressed
LOC_Os01g61830	Os.32086.3.S1_s_at	11/11	1	+	36094431..36099226	Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61830	Os.32086.1.S1_at	11/11	1	+	36094431..36099226	Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61830	Os.32086.2.S1_x_at	11/11	1	+	36094431..36099226	Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61830	Os.32086.3.S1_x_at	10/11	1	+	36094431..36099226	Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61840	OsAffx.23886.1.S1_x_at	5/11	1	+	36102919..36103158	hypothetical protein
LOC_Os01g61850	NA	NA	1	+	36108739..36109430	expressed protein
LOC_Os01g61860	OsAffx.23887.2.S1_x_at	11/11	1	+	36111315..36120301	RabGAP/TBC domain-containing protein, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006355	biological_process	regulation of transcription, DNA-dependent
GO:0006412	biological_process	protein biosynthesis
GO:0005840	cellular_component	ribosome
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	transcription factor activity
GO:0003735	molecular_function	structural constituent of ribosome

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.57454.1.S1_x_at--651--459	1	NONE	GCGCAAGTCAAGACCCACCGCAGAA	NONE
Os.57454.1.S1_x_at--8--277	2	Chr01:36091236..36091261 (25 bp)	AAGACCCACCGCAGAACCAGAGATG	LOC_Os01g61820
Os.57454.1.S1_x_at--635--179	2	Chr01:36091229..36091254 (25 bp)	ACCGCAGAACCAGAGATGGGCAGAC	LOC_Os01g61820
Os.57454.1.S1_x_at--242--135	2	Chr01:36091218..36091242 (25 bp)	AGAGATGGGCAGACAAGGCCTACAA	LOC_Os01g61820
Os.57454.1.S1_x_at--1084--559	2	Chr01:36091207..36091231 (25 bp)	GACAAGGCCTACAAGAAGAGCCACT	LOC_Os01g61820
Os.57454.1.S1_x_at--148--127	3	Chr10:10298184..10298203 (20 bp)	AGATTTGGTATTGAGGCCAAGCAGC	LOC_Os10g20990
Os.57454.1.S1_x_at--48--275	1	NONE	AAGAAGATTGCTTGCCTTTGTGCCC	NONE
Os.57454.1.S1_x_at--1040--281	1	NONE	AAGATTGCTTGCCTTTGTGCCCAAT	NONE
Os.57454.1.S1_x_at--470--7	1	NONE	ATTGCTTGCCTTTGTGCCCAATGAC	NONE
Os.57454.1.S1_x_at--675--491	2	Chr01:36090953..36090974 (22 bp)	GCTTGCCTTTGTGCCCAATGACGGT	LOC_Os01g61820
Os.57454.1.S1_x_at--940--917	2	Chr01:36090950..36090974 (25 bp)	TGCCTTTGTGCCCAATGACGGTTGC	LOC_Os01g61820

Target Sequence

GCGCAAGTCAAGACCCACCGCAGAACCAGAGATGGGCAGACAAGGCCTACAAGAAGAGCCACTTNGGTAATGAGTGGAAG
AAACCCTTTGCTGGGTNATCTCATTCCAAGGGCATCGTTCTNGAGAAGATTTGGTATTGAGGCCAAGCAGCCCAACTCTG
CCATCCGTAAGTGTGCTCGTGTGCAGCTTGTGAAGAATGGGGAAGAAGATTGCTTGCCTTTGTGCCCAATGACGGTTGC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis