Browse Element(s) Details


Os.57464.1.S1_x_at

Description gb:AU093199
DB_XREF= gi:8528384
DB_XREF=AU093199
CLONE=C1269
TID=Os.57464.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57464 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for alcohol dehydrogenase (S17 gene), partial sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g104808/11Alcohol dehydrogenase 1, putative, expressed
LOC_Os11g105101/11Alcohol dehydrogenase 2, putative, expressed
LOC_Os11g105201/11Alcohol dehydrogenase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10440NANA11+5683496..5687241transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g10450NANA11+5689779..5691743transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g10460OsAffx.18781.1.S1_x_at11/1111+5695351..5697416Peroxidase 43 precursor, putative, expressed
LOC_Os11g10460Os.2427.1.S1_at11/1111+5695351..5697416Peroxidase 43 precursor, putative, expressed
LOC_Os11g10470Os.2426.1.A1_at11/1111+5706101..5706713expressed protein
LOC_Os11g10480Os.12591.2.S1_x_at11/1111+5708122..5711756Alcohol dehydrogenase 1, putative, expressed
LOC_Os11g10480Os.57464.1.S1_x_at8/1111+5708122..5711756Alcohol dehydrogenase 1, putative, expressed
LOC_Os11g10490OsAffx.32023.1.S1_at10/1111+5724289..5728101transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g10500OsAffx.10633.1.S1_at8/1111+5732590..5738801retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0001666biological_processresponse to hypoxia
GO:0045333biological_processcellular respiration
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0004327molecular_functionformaldehyde dehydrogenase (glutathione) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57464.1.S1_x_at--649--371NONE
ATCAAGTGCAAAGCGGCGGTGGCAT
NONE
Os.57464.1.S1_x_at--731--4093Chr11:5743187..5743211 (25 bp)
CGACGTCTACTTCTGGGAGGCCAAG
LOC_Os11g10510
Os.57464.1.S1_x_at--627--871Chr11:5710841..5710962 (25 bp)
AGGCCAAGGGACAGACTCCCGTGTT
LOC_Os11g10480
Os.57464.1.S1_x_at--972--1371Chr11:5710829..5710853 (25 bp)
AGACTCCCGTGTTCCCTCGGATCTT
LOC_Os11g10480
Os.57464.1.S1_x_at--637--8051NONE
GGAGAGGGTGTGACTGATCTTCCCC
NONE
Os.57464.1.S1_x_at--11--8851Chr11:5709926..5709951 (25 bp)
TGATCTTCCCCTGGTGACCATGTTC
LOC_Os11g10480
Os.57464.1.S1_x_at--429--1731NONE
ACCATGTTCTCCCTATATTCACTGG
NONE
Os.57464.1.S1_x_at--1071--7331Chr11:5709882..5709906 (25 bp)
GTGCAAGGAGTGTGCCCACTGCAAG
LOC_Os11g10480
Os.57464.1.S1_x_at--267--7471Chr11:5709873..5709897 (25 bp)
GTGTGCCCACTGCAAGTCAGCAGAG
LOC_Os11g10480
Os.57464.1.S1_x_at--429--3411Chr11:5709856..5709880 (25 bp)
CAGCAGAGAGCAACATGTGTGATCT
LOC_Os11g10480
Os.57464.1.S1_x_at--633--6411Chr11:5709835..5709860 (25 bp)
GATCTGCTCAGGATCACACTGACAG
LOC_Os11g10480
Target Sequence 
ATCAAGTGCAAAGCGGCGGTGGCATGGGATCGAGGAGGTGGAGGTGGCGCCGCCGCANCATTGGAGGTGCGCGTCAAGAT
CCTCTTCACCTCGCTCTGCCACACCGACGTCTACTTCTGGGAGGCCAAGGGACAGACTCCCGTGTTCCCTCGGATCTTNG
GCCATGAAGCTGGAGGTNTTGTGGAGAGTGTTGGAGAGGGTGTGACTGATCTTCCCCTGGTGACCATGTTCTCCCTATAT
TCACTGGGGAGTGCAAGGAGTGTGCCCACTGCAAGTCAGCAGAGAGCAACATGTGTGATCTGCTCAGGATCACACTGACA
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57464.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis