Browse Element(s) Details


Os.57465.1.S1_x_at

Description gb:D10418.1
DB_XREF= gi:218214
TID=Os.57465.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57465 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for sucrose synthase (S464 gene), partial sequence
DEF=Rice mRNA for sucrose synthase (S464 gene), partial sequence.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g283308/11Sucrose synthase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g28289NANA3+16259117..16260917hypothetical protein
LOC_Os03g28300Os.14381.1.S1_at11/113+16261544..16269240Protein kinase domain containing protein, expressed
LOC_Os03g28300Os.14381.2.S1_x_at10/113+16261544..16269240Protein kinase domain containing protein, expressed
LOC_Os03g28300Os.14381.1.S1_a_at10/113+16261544..16269240Protein kinase domain containing protein, expressed
LOC_Os03g28310Os.12806.1.S2_at11/113+16272507..16275882DnaJ domain containing protein, expressed
LOC_Os03g28310Os.12806.1.S1_at11/113+16272507..16275882DnaJ domain containing protein, expressed
LOC_Os03g28330Os.25677.1.S1_at11/113+16280041..16286369Sucrose synthase 2, putative, expressed
LOC_Os03g28330Os.55599.1.S1_at11/113+16280041..16286369Sucrose synthase 2, putative, expressed
LOC_Os03g28330Os.57465.1.S1_x_at8/113+16280041..16286369Sucrose synthase 2, putative, expressed
LOC_Os03g28350OsAffx.13096.1.S1_at11/113+16310037..16310837hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0001666biological_processresponse to hypoxia
GO:0005986biological_processsucrose biosynthesis
GO:0009409biological_processresponse to cold
GO:0009413biological_processresponse to flooding
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016157molecular_functionsucrose synthase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57465.1.S1_x_at--165--8871NONE
TGAGTCTCGTAAGAGCTACCTCCCT
NONE
Os.57465.1.S1_x_at--1049--6051Chr03:16281507..16281531 (25 bp)
GAGTTGCTCTACAGCGAAGTTGACA
LOC_Os03g28330
Os.57465.1.S1_x_at--170--2071Chr03:16281318..16281342 (25 bp)
ACTTGACTGGTCTGGTTGAGCTGTA
LOC_Os03g28330
Os.57465.1.S1_x_at--1111--10751Chr03:16281303..16281327 (25 bp)
TTGAGCTGTATGGTCGCAACCCTCG
LOC_Os03g28330
Os.57465.1.S1_x_at--538--1811Chr03:16281285..16281309 (25 bp)
ACCCTCGCCTGCAAGAGCTGGTTAA
LOC_Os03g28330
Os.57465.1.S1_x_at--722--8611Chr03:16281245..16281269 (25 bp)
TGGTGACCATGGCAACCCATCTAAG
LOC_Os03g28330
Os.57465.1.S1_x_at--469--331Chr03:16281170..16281194 (25 bp)
ATACAACTTGAATGGCCACATCCGC
LOC_Os03g28330
Os.57465.1.S1_x_at--688--8911NONE
TGAGCTCTACCGTTACATCTTGCGA
NONE
Os.57465.1.S1_x_at--718--1691Chr03:16281089..16281109 (21 bp)
ACCAAGGGTGCTTTTGTGCAGCCGC
LOC_Os03g28330
Os.57465.1.S1_x_at--730--10311Chr03:16280961..16280985 (25 bp)
TTTCTACGAGGCATTCGGTCTCACT
LOC_Os03g28330
Os.57465.1.S1_x_at--286--3971NONE
CGGTCTCACTGGTTGTTGAGTCCAT
NONE
Target Sequence 
TGAGTCTCGTAAGAGCTACCTCCCTCCACCCAGAGATTGAGGAGTTGCTCTACAGCGAAGTTGACAACAACGACGACAAG
TTTATGCTGAAGGACAGGAACAAGCCAATCATCTTCTCCATGGCTCGTCTTGACCGTGTCANGAACTTGACTGGTCTGGT
TGAGCTGTATGGTCGCAACCCTCGCCTGCAAGAGCTGGTTAACNNTGTGGTTGTCTGTGGTGACCATGGCAACCCATCTA
AGGACAAGGAGGAGCAGGCTGAGTTCAAGAAGATGTTTGACCTTATTGAGCAATACAACTTGAATGGCCACATCCGCTGG
ATCTCCGCGCAGATGAACCGTGTCCGCAACGGTGAGCTCTACCGTTACATCTTGCGACACCAAGGGTGCTTTTGTGCAGC
CGCTTTCTACGAGGCATTCGGTCTCACTGGTTGTTGAGTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57465.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis