Browse Element(s) Details


Os.57469.1.S1_x_at

Description gb:D10421.1
DB_XREF= gi:218240
TID=Os.57469.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57469 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for cytochrome C (T76 gene), partial sequence
DEF=Rice mRNA for cytochrome C (T76 gene), partial sequence.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g347708/11Cytochrome c, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34740NANA5+20522157..20522465hypothetical protein
LOC_Os05g34750NANA5+20532111..20535654retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g34760Os.14243.1.S1_at11/115+20537737..20545104expressed protein
LOC_Os05g34760OsAffx.22564.2.S1_at2/115+20537737..20545104expressed protein
LOC_Os05g34770OsAffx.27166.1.S1_at11/115+20546857..20549136Cytochrome c, putative, expressed
LOC_Os05g34770Os.10312.1.S1_at9/115+20546857..20549136Cytochrome c, putative, expressed
LOC_Os05g34770Os.57469.1.S1_x_at8/115+20546857..20549136Cytochrome c, putative, expressed
LOC_Os05g34780Os.27987.1.S1_at10/115+20553243..20560169retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g34780Os.38751.1.A1_at8/115+20553243..20560169retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g34780OsAffx.8469.1.S1_x_at1/115+20553243..20560169retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g34780OsAffx.1197.1.S1_x_at1/115+20553243..20560169retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g34790Os.51415.1.S1_at11/115+20563271..20565837GYF domain containing protein, expressed
LOC_Os05g34800Os.51415.2.S1_at11/115+20565099..20567342expressed protein
LOC_Os05g34800OsAffx.24510.1.S1_x_at1/115+20565099..20567342expressed protein
LOC_Os05g34810OsAffx.14964.1.S1_at11/115+20568066..20568638hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0008283biological_processcell proliferation
GO:0005739cellular_componentmitochondrion
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57469.1.S1_x_at--189--4271Chr05:20546984..20547008 (25 bp)
CCGGCGAGAAGATCTTCAAGACCAA
LOC_Os05g34770
Os.57469.1.S1_x_at--52--1291Chr05:20546993..20547017 (25 bp)
AGATCTTCAAGACCAAGTGCGCCCA
LOC_Os05g34770
Os.57469.1.S1_x_at--1014--431Chr05:20546995..20547019 (25 bp)
ATCTTCAAGACCAAGTGCGCCCAGT
LOC_Os05g34770
Os.57469.1.S1_x_at--674--10491Chr05:20546998..20547022 (25 bp)
TTCAAGACCAAGTGCGCCCAGTGCC
LOC_Os05g34770
Os.57469.1.S1_x_at--568--1131Chr05:20547017..20547041 (25 bp)
AGTGCCACACCGTCGACAAGGGCGC
LOC_Os05g34770
Os.57469.1.S1_x_at--792--2871Chr05:20547034..20547057 (23 bp)
AAGGGCGCCGGCACAAGCAAGGTCC
LOC_Os05g34770
Os.57469.1.S1_x_at--462--4471NONE
GCCGGCACAAGCAAGGTCCAAACTT
NONE
Os.57469.1.S1_x_at--211--2771NONE
AAGGTCCAAACTTGAATTGTCTGTT
NONE
Os.57469.1.S1_x_at--120--5211Chr05:20547893..20547912 (20 bp)
GAATTGTCTGTTTGGAAGGCAGTCA
LOC_Os05g34770
Os.57469.1.S1_x_at--669--4371Chr05:20547944..20547967 (24 bp)
CCAACAAGAACATGGCTGTGATCTT
LOC_Os05g34770
Os.57469.1.S1_x_at--672--3231NONE
CAAGAACATGGCTGTGATCTTGGAG
NONE
Target Sequence 
CCGGCGAGAAGATCTTCAAGACCAAGTGCGCCCAGTGCCACACCGTCGACAAGGGCGCCGGCACAAGCAAGGTCCAAACT
TGAATTGTCTGTTTGGAAGGCAGTCANGTACCACCCCTNGTTATTCCTACTCTNCNGCCAACAAGAACATGGCTGTGATC
TTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57469.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis