Browse Element(s) Details


Os.5754.1.S1_at

Description gb:AK099590.1
DB_XREF= gi:32984799
TID=Os.5754.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.5754 (NCBI UniGene Cluster)
UG_TITLE=(indica cultivar-group) R10C1 mRNA, partial sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013043H11, full insert sequence.
FL= gb:AK104727.1 gb:AK099590.1 gb:AK061429.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0445011/11DAG protein, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04400NANA8+2148255..2150812pentatricopeptide, putative, expressed
LOC_Os08g04410Os.50227.1.S1_at8/118+2151485..2152488hypothetical protein
LOC_Os08g04420OsAffx.16824.1.S1_at11/118+2153170..2156451Protein kinase domain containing protein, expressed
LOC_Os08g04430OsAffx.16825.1.S1_s_at10/118+2164054..2165002expressed protein
LOC_Os08g04440Os.9748.1.S1_at10/118+2167191..2170704RNA recognition motif family protein, expressed
LOC_Os08g04440Os.9748.2.S1_x_at10/118+2167191..2170704RNA recognition motif family protein, expressed
LOC_Os08g04450Os.5754.1.S1_at11/118+2171814..2173858DAG protein, chloroplast precursor, putative, expressed
LOC_Os08g04460Os.9162.1.S1_at11/118+2176426..2178461NADPH-dependent FMN reductase family protein, expressed
LOC_Os08g04470OsAffx.5699.1.S1_at11/118+2189097..2190635U-box domain containing protein, expressed
LOC_Os08g04470Os.54040.1.S1_at11/118+2189097..2190635U-box domain containing protein, expressed
LOC_Os08g04480OsAffx.5700.1.S1_x_at11/118+2197103..2197961hypothetical protein
LOC_Os08g04490OsAffx.5701.1.S1_at11/118+2198769..2203345hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5754.1.S1_at--329--1171Chr08:2172360..2172382 (23 bp)
AGTCAGCCTCTTCTTCATGAGGTCA
LOC_Os08g04450
Os.5754.1.S1_at--681--6151Chr08:2172269..2172292 (24 bp)
GAGGTCAGTTTTGCAGGCACTCATC
LOC_Os08g04450
Os.5754.1.S1_at--639--9971Chr08:2172215..2172239 (25 bp)
TAGCTAATTCTACCACTTGGCGTCG
LOC_Os08g04450
Os.5754.1.S1_at--487--10871Chr08:2172199..2172223 (25 bp)
TTGGCGTCGCATACGGGAAAGCTCT
LOC_Os08g04450
Os.5754.1.S1_at--570--5611Chr08:2172170..2172194 (25 bp)
GACAAATCTATCCTCAACCCAAAAT
LOC_Os08g04450
Os.5754.1.S1_at--433--251Chr08:2172147..2172171 (25 bp)
ATATCATCCAGAGCTGTGCAAGCGA
LOC_Os08g04450
Os.5754.1.S1_at--272--5171Chr08:2172130..2172154 (25 bp)
GCAAGCGATTCATGCAGGCTGCATT
LOC_Os08g04450
Os.5754.1.S1_at--106--7531Chr08:2172060..2172084 (25 bp)
GTGGACTATGACCTCTGAATGTGAC
LOC_Os08g04450
Os.5754.1.S1_at--704--6471Chr08:2171982..2172006 (25 bp)
GATATTTTTCTTGTGTTACCCTGCT
LOC_Os08g04450
Os.5754.1.S1_at--14--10231Chr08:2171865..2171889 (25 bp)
TATTGGCATTTGTTCTGCTCAGAGC
LOC_Os08g04450
Os.5754.1.S1_at--883--1371Chr08:2171845..2171869 (25 bp)
AGAGCCTGAGACTTGCAATTTGGGA
LOC_Os08g04450
Target Sequence 
AGTCAGCCTCTTCTTCATGAGGTCAGTTTTGCAGGCACTCATCCACGTAATGGAAAGAAAGAACTTGCTTACTAGCTAAT
TCTACCACTTGGCGTCGCATACGGGAAAGCTCTGNCAGACAAATCTATCCTCAACCCAAAATATCATCCAGAGCTGTGCA
AGCGATTCATGCAGGCTGCATTTGGAATTTTGGATCATGTGGATCATCATCATTCTTGATATTTTGGGTGGACTATGACC
TCTGAATGTGACANAAAGACGGAAATTCTGATCTATCTAAGAATGTTACTGTCTCAAATATCTAGTGATATTTTTCTTGT
GTTACCCTGCTACCTAGTAGTTGTGTTGCTGGTTTGTGTGTNNGGAATTTCTTGATCCTTATCCATGTGAGNTTTCTTGA
ACTGAAGTTGATTTTTTGGCCTTTGTATTGGCATTTGTTCTGCTCAGAGCCTGAGACTTGCAATTTGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5754.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis