Browse Element(s) Details


Os.5792.1.S1_a_at

Description gb:AK120820.1
DB_XREF= gi:37990443
TID=Os.5792.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.5792 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023034D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023016N14, full insert sequence.
FL= gb:AK120820.1 gb:AK099113.1 gb:AK067568.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3147011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31430Os.51870.1.S1_at11/118+19308410..19309802BTB/POZ domain containing protein, expressed
LOC_Os08g31440Os.52625.1.S1_at10/118+19312977..19314460expressed protein
LOC_Os08g31450OsAffx.5995.1.S1_at10/118+19315445..19319160MATH domain containing protein
LOC_Os08g31450OsAffx.19006.1.S1_at5/118+19315445..19319160MATH domain containing protein
LOC_Os08g31450OsAffx.29576.5.S1_at1/118+19315445..19319160MATH domain containing protein
LOC_Os08g31460Os.39989.1.S1_s_at2/118+19323595..19327127tRNA modification GTPase TrmE family protein
LOC_Os08g31470Os.5792.1.S1_a_at11/118+19331101..19336339expressed protein
LOC_Os08g31480OsAffx.29453.1.S1_at11/118+19339110..19341220hypothetical protein
LOC_Os08g31510Os.53773.1.S1_s_at11/118+19357249..19358796expressed protein
LOC_Os08g31520OsAffx.17271.1.S1_at11/118+19359315..19360250hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5792.1.S1_a_at--14--7611Chr08:19335688..19335712 (25 bp)
GGGAATCGTCACCTGTTGCTGGTCC
LOC_Os08g31470
Os.5792.1.S1_a_at--47--10331Chr08:19335739..19335763 (25 bp)
TTTACGAGCCTCTTGGAATCAACAT
LOC_Os08g31470
Os.5792.1.S1_a_at--594--371Chr08:19335756..19335780 (25 bp)
ATCAACATCCAACAGCTTCCAAGAG
LOC_Os08g31470
Os.5792.1.S1_a_at--213--6291Chr08:19335807..19335831 (25 bp)
GATGAGTTCCATGTCGACACGGTGG
LOC_Os08g31470
Os.5792.1.S1_a_at--344--31Chr08:19335867..19335891 (25 bp)
ATTGGCATGTCTCCAGCACGCGAAG
LOC_Os08g31470
Os.5792.1.S1_a_at--905--2951Chr08:19335903..19335927 (25 bp)
AATGGCGACCTGAACAACCTTGCGG
LOC_Os08g31470
Os.5792.1.S1_a_at--626--9131Chr08:19335923..19335947 (25 bp)
TGCGGAGCTAGAGAATTCACCTGAA
LOC_Os08g31470
Os.5792.1.S1_a_at--723--8991Chr08:19335944..19335968 (25 bp)
TGAAGACATTTGCTTCTCCCTGCAT
LOC_Os08g31470
Os.5792.1.S1_a_at--382--3011Chr08:19336035..19336059 (25 bp)
AATGAAGCTGTGTGCTGCTGTTCCA
LOC_Os08g31470
Os.5792.1.S1_a_at--944--4011Chr08:19336066..19336090 (25 bp)
CCCAGCTCTGTATAACCTAGTGAAG
LOC_Os08g31470
Os.5792.1.S1_a_at--920--251Chr08:19336123..19336147 (25 bp)
ATATGGGCTAGGTATTTGTTTCCGG
LOC_Os08g31470
Target Sequence 
GGGAATCGTCACCTGTTGCTGGTCCTCAAGAAAATGAGAAAGTTGACAAGATTTACGAGCCTCTTGGAATCAACATCCAA
CAGCTTCCAAGAGACAATTCAGCCACCTCCACAGGACCCGATGAGTTCCATGTCGACACGGTGGAAGGCGTCACCAACGT
CGAGGAGCGCCAATTCCTCATTGGCATGTCTCCAGCACGCGAAGGCCAAGAAGCCAATGGCGACCTGAACAACCTTGCGG
AGCTAGAGAATTCACCTGAAGACATTTGCTTCTCCCTGCATCTGGGCGAGAGGGAGCCCAAGCGACTCCGCTCCGATTCG
TCGCTGGACATAGACTTGCAGAAATGAAATGAAGCTGTGTGCTGCTGTTCCATCACCNCCCAGCTCTGTATAACCTAGTG
AAGGCAGTTCCATTCTATGAACCCAATAGAAATAAATATGGGCTAGGTATTTGTTTCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5792.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis