Browse Element(s) Details


Os.5808.1.S1_at

Description gb:AK058543.1
DB_XREF= gi:32968561
TID=Os.5808.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5808 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-017-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-017-B11, full insert sequence.
FL= gb:AK058543.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1692011/11S276, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16880Os.46306.1.S1_x_at2/119+10309955..10313081transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g16890NANA9+10315321..10317927transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g16899Os.37711.3.S1_x_at1/119+10321000..10321390NA
LOC_Os09g16899OsAffx.28616.1.S1_at1/119+10321000..10321390NA
LOC_Os09g16899OsAffx.31115.1.S1_at1/119+10321000..10321390NA
LOC_Os09g16910Os.9367.1.S1_a_at11/119+10327825..10332198Cysteine desulfurase, mitochondrial precursor, putative, expressed
LOC_Os09g16920Os.5808.1.S1_at11/119+10337557..10339425S276, putative, expressed
LOC_Os09g16920Os.27524.2.S1_at11/119+10337557..10339425S276, putative, expressed
LOC_Os09g16920Os.27524.2.S1_x_at2/119+10337557..10339425S276, putative, expressed
LOC_Os09g16930OsAffx.14848.1.S1_at1/119+10352825..10356205retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g16940OsAffx.10633.1.S1_at4/119+10356666..10359190retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g16950Os.26900.1.A1_at11/119+10364053..10367261lectin protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006629biological_processlipid metabolism
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0005489molecular_functionelectron transporter activity
GO:0016491molecular_functionoxidoreductase activity
GO:0042284molecular_functionsphingolipid delta-4 desaturase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5808.1.S1_at--23--2091Chr09:10338784..10338808 (25 bp)
ACATTCAGTGCTCGCCATGGATGGA
LOC_Os09g16920
Os.5808.1.S1_at--919--1231Chr09:10338829..10338853 (25 bp)
AGTTCCAAATCGAGCACCATCTGTT
LOC_Os09g16920
Os.5808.1.S1_at--328--10431Chr09:10338877..10338901 (25 bp)
TTAGGAAGGTTTCGCCATTTGTTCG
LOC_Os09g16920
Os.5808.1.S1_at--186--3591Chr09:10338892..10338916 (25 bp)
CATTTGTTCGTGACCTTTGCAAGAA
LOC_Os09g16920
Os.5808.1.S1_at--54--6731Chr09:10338944..10338968 (25 bp)
GTTCTGGCAGGCTAATGTGTTGACA
LOC_Os09g16920
Os.5808.1.S1_at--873--2651Chr09:10339006..10339030 (25 bp)
AAGCCACTAGTGGTGCTGCGCCAAA
LOC_Os09g16920
Os.5808.1.S1_at--777--4931Chr09:10339087..10339111 (25 bp)
GCTTGTGTGCATGCAATCACCTCAA
LOC_Os09g16920
Os.5808.1.S1_at--45--6411Chr09:10339166..10339190 (25 bp)
GATCGGATTTTTCGTGTTGGCAAGT
LOC_Os09g16920
Os.5808.1.S1_at--808--631Chr09:10339221..10339245 (25 bp)
ATGCTTCAATTGTCTACCTGTTCTT
LOC_Os09g16920
Os.5808.1.S1_at--955--6871Chr09:10339249..10339273 (25 bp)
GTATTAGATTGTCCGATTCTTCGCA
LOC_Os09g16920
Os.5808.1.S1_at--495--6571Chr09:10339263..10339287 (25 bp)
GATTCTTCGCATTATCACGGTAACT
LOC_Os09g16920
Target Sequence 
ACATTCAGTGCTCGCCATGGATGGATTGGTTCCACGGTGGCCTGCAGTTCCAAATCGAGCACCATCTGTTTCCTCGCCTC
CCGCGNNGCCNCCTTAGGAAGGTTTCGCCATTTGTTCGTGACCTTTGCAAGAAGCATGGGCTGCCTTATGCCGCCGCCTC
GTTCTGGCAGGCTAATGTGTTGACATGGAAGACATTGAGGGCTGCTGCATTGCAGGCCAGGAAAGCCACTAGTGGTGCTG
CGCCAAAGAATTTGGTTTGGGAAGCTGTGAACACTCATGGATGAATTGGAGCCTGAGGCAACTGCTTGTGTGCATGCAAT
CACCTCAATGCTTNTTAATTGTGTAGGGAGATTGATCTTTTTACCTTTACCCGTTGGAGTTGGATCGGATTTTTCGTGTT
GGCAAGTGTCTTGTCTTTGCAGCTGAAGAGTGGGTTTATGCTTCAATTGTCTACCTGTTCTTCATGTATTAGATTGTCCG
ATTCTTCGCATTATCACGGTAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5808.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis