Browse Element(s) Details


Os.26900.1.A1_at

Description gb:AK065757.1
DB_XREF= gi:32975775
TID=Os.26900.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26900 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013040D23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013040D23, full insert sequence.
FL= gb:AK065757.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1695011/11lectin protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16920Os.5808.1.S1_at11/119+10337557..10339425S276, putative, expressed
LOC_Os09g16920Os.27524.2.S1_at11/119+10337557..10339425S276, putative, expressed
LOC_Os09g16920Os.27524.2.S1_x_at2/119+10337557..10339425S276, putative, expressed
LOC_Os09g16930OsAffx.14848.1.S1_at1/119+10352825..10356205retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g16940OsAffx.10633.1.S1_at4/119+10356666..10359190retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g16950Os.26900.1.A1_at11/119+10364053..10367261lectin protein kinase, putative, expressed
LOC_Os09g16960OsAffx.29880.1.S1_at10/119+10367725..10370428hypothetical protein
LOC_Os09g16960OsAffx.15850.1.S1_at1/119+10367725..10370428hypothetical protein
LOC_Os09g16970OsAffx.6308.1.S1_s_at11/119+10372584..10374583hypothetical protein
LOC_Os09g16980OsAffx.6309.1.S1_at10/119+10377531..10380849Calcium binding EGF domain containing protein
LOC_Os09g16990OsAffx.29881.1.S1_at11/119+10384915..10385752expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26900.1.A1_at--204--5791Chr09:10366695..10366719 (25 bp)
GACGACGCGAGGTTGCCGGATCTCT
LOC_Os09g16950
Os.26900.1.A1_at--746--731Chr09:10366728..10366752 (25 bp)
ATGTACAAGTCCAAGGCGTCACCGC
LOC_Os09g16950
Os.26900.1.A1_at--982--6531Chr09:10366779..10366803 (25 bp)
GATTACGGCGGTGTCAGTACAGGTA
LOC_Os09g16950
Os.26900.1.A1_at--923--1172Chr09:10366794..10366818 (25 bp)
AGTACAGGTAGCACGTTCTCAGGCA
LOC_Os09g16950
Os.26900.1.A1_at--1155--1871Chr09:10366806..10366830 (25 bp)
ACGTTCTCAGGCAGTGGTGTTCCCA
LOC_Os09g16950
Os.26900.1.A1_at--312--5931Chr09:10366949..10366973 (25 bp)
GAGCATCGGGTAGCTATTTCTATCA
LOC_Os09g16950
Os.26900.1.A1_at--423--5611Chr09:10367147..10367171 (25 bp)
GACAAATCACCTCTTACAATCACTA
LOC_Os09g16950
Os.26900.1.A1_at--916--2231Chr09:10367162..10367186 (25 bp)
ACAATCACTAGTCTCTCAGTTCCTG
LOC_Os09g16950
Os.26900.1.A1_at--26--6711Chr09:10367180..10367204 (25 bp)
GTTCCTGCTGGAGGCTTTTGTATGT
LOC_Os09g16950
Os.26900.1.A1_at--835--731Chr09:10367201..10367225 (25 bp)
ATGTTAGGCTTTTCAAGGACCCATA
LOC_Os09g16950
Os.26900.1.A1_at--68--1951Chr09:10367227..10367251 (25 bp)
ACGGCTGTTATATATTCGATGTCAA
LOC_Os09g16950
Target Sequence 
GACGACGCGAGGTTGCCGGATCTCTCGCCGCAGATGTACAAGTCCAAGGCGTCACCGCCTCCAAGAGATGTCGCCGTGGG
GGTAGATTACGGCGGTGTCAGTACAGGTAGCACGTTCTCAGGCAGTGGTGTTCCCACATCGGCGACCACAACAACCACGC
GTTCCTCCGGATCATTTGTTGGTTGATACAATCTTTGTGGGTATAAATACATTTGCTTATTATCTGTTATCAGAAAAGGG
AGAATATTAGTTCTGAGCATCGGGTAGCTATTTCTATCAATGGTATAAATTTTAGTTGTATGAGAAATACATTAGTTATT
TCTAAATTATAGCAACTTATTATATTCAAATAATTTCCATGTTTGTAGCAAATTGCTAATTATTTGTTTTGATTTTTGAT
ATCAATTTAATAGGGCTTCCCATTTGGAATGACATAATGGGCATCCATTTTAGACAAATCACCTCTTACAATCACTAGTC
TCTCAGTTCCTGCTGGAGGCTTTTGTATGTTAGGCTTTTCAAGGACCCATATACGGCTGTTATATATTCGATGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26900.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis