Browse Element(s) Details


OsAffx.29880.1.S1_at

Description tigr:9637.m01435
TID=OsAffx.29880.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1696010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16930OsAffx.14848.1.S1_at1/119+10352825..10356205retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g16940OsAffx.10633.1.S1_at4/119+10356666..10359190retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g16950Os.26900.1.A1_at11/119+10364053..10367261lectin protein kinase, putative, expressed
LOC_Os09g16960OsAffx.29880.1.S1_at10/119+10367725..10370428hypothetical protein
LOC_Os09g16960OsAffx.15850.1.S1_at1/119+10367725..10370428hypothetical protein
LOC_Os09g16970OsAffx.6308.1.S1_s_at11/119+10372584..10374583hypothetical protein
LOC_Os09g16980OsAffx.6309.1.S1_at10/119+10377531..10380849Calcium binding EGF domain containing protein
LOC_Os09g16990OsAffx.29881.1.S1_at11/119+10384915..10385752expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29880.1.S1_at--830--8011Chr09:10369551..10369575 (25 bp)
GGAGGTCTGGTGCTAAGGAGGCCAC
LOC_Os09g16960
OsAffx.29880.1.S1_at--50--4011Chr09:10369502..10369526 (25 bp)
CGTCCAGAAGAGGATCAACACATTA
LOC_Os09g16960
OsAffx.29880.1.S1_at--629--6451Chr09:10369490..10369514 (25 bp)
GATCAACACATTATTTCCTGGCACG
LOC_Os09g16960
OsAffx.29880.1.S1_at--490--2471Chr09:10369486..10369510 (25 bp)
AACACATTATTTCCTGGCACGAAGA
LOC_Os09g16960
OsAffx.29880.1.S1_at--886--10411Chr09:10369480..10369504 (25 bp)
TTATTTCCTGGCACGAAGAAGGTGG
LOC_Os09g16960
OsAffx.29880.1.S1_at--516--4111Chr09:10369467..10369491 (25 bp)
CGAAGAAGGTGGACGCTGCAAACAT
LOC_Os09g16960
OsAffx.29880.1.S1_at--1019--2491Chr09:10369447..10369471 (25 bp)
AACATGTTGGAGACGCTCCGCTCGA
LOC_Os09g16960
OsAffx.29880.1.S1_at--584--9291Chr09:10369434..10369455 (22 bp)
TCCGCTCGATGGGAGCCTTCAGAAA
LOC_Os09g16960
OsAffx.29880.1.S1_at--1143--5851NONE
GAGCCTTCAGAAATTGCAGGTTATT
NONE
OsAffx.29880.1.S1_at--286--3591Chr09:10367781..10367860 (25 bp)
CATTTCTGGTCTCCATTGCACAATG
LOC_Os09g16960
OsAffx.29880.1.S1_at--791--3891Chr09:10367776..10367855 (25 bp)
CTGGTCTCCATTGCACAATGTCGTC
LOC_Os09g16960
Target Sequence 
GGAGGTCTGGTGCTAAGGAGGCCACCGAGCAACCCTCGATCCACTGGTCCGTCCAGAAGAGGATCAACACATTATTTCCT
GGCACGAAGAAGGTGGACGCTGCAAACATGTTGGAGACGCTCCGCTCGATGGGAGCCTTCAGAAATTGCAGGTTATTAGG
TGATGGTTTGACTTCTGAGCTTGCTGGCCGGTTATCTTCTCCATCGAGGTGGTTGTTTGCTGTTAGCCTGTTACTGGTTA
GTGCTTACTACTTAGTGGTTGGTGCTCATTTCTGGTCTCCATTGCACAATGTCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29880.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis