Browse Element(s) Details


Os.5814.1.S1_at

Description gb:AK070990.1
DB_XREF= gi:32981013
TID=Os.5814.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5814 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ATP synthase delta chain, mitochondrial precursor-like protein~contains EST AU172874(E40017) (OJ1457_D07.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078O13, full insert sequence.
FL= gb:AK070990.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3130011/11ATP synthase delta chain, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31270Os.49873.1.S1_at11/117+18508310..18513451expressed protein
LOC_Os07g31280Os.18100.1.S1_at11/117+18517697..18521925Casein kinase II beta-4 subunit, putative, expressed
LOC_Os07g31280Os.47708.1.A1_at11/117+18517697..18521925Casein kinase II beta-4 subunit, putative, expressed
LOC_Os07g31290OsAffx.16505.2.S1_x_at11/117+18526814..18530103Protein kinase APK1B, chloroplast precursor, putative
LOC_Os07g31300Os.5814.1.S1_at11/117+18530853..18533386ATP synthase delta chain, mitochondrial precursor, putative, expressed
LOC_Os07g31310Os.44002.1.S1_at11/117+18536271..18539583expressed protein
LOC_Os07g31320Os.25527.1.S1_at11/117+18544075..18545159expressed protein
LOC_Os07g31330NANA7+18550305..18551409hypothetical protein
LOC_Os07g31340Os.18837.1.A1_a_at11/117+18553848..18563525Regulator of nonsense transcripts 1 homolog, putative, expressed
LOC_Os07g31340Os.18837.3.S1_x_at10/117+18553848..18563525Regulator of nonsense transcripts 1 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005753cellular_componentproton-transporting ATP synthase complex (sensu Eukaryota)
GO:0046933molecular_functionhydrogen-transporting ATP synthase activity, rotational mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5814.1.S1_at--346--9651Chr07:18531372..18531396 (25 bp)
TCAGATGGGTGTTTTGCCAGGCCAC
LOC_Os07g31300
Os.5814.1.S1_at--500--1891Chr07:18531349..18531373 (25 bp)
ACGTTTCCACAATCGCAGAGCTCAA
LOC_Os07g31300
Os.5814.1.S1_at--1143--9711Chr07:18531328..18531352 (25 bp)
TCAAGCCTGGTGTTCTCTCGGTACA
LOC_Os07g31300
Os.5814.1.S1_at--826--5931Chr07:18531273..18531297 (25 bp)
GAGCAGTGGCTTTGCATTTGTCCAT
LOC_Os07g31300
Os.5814.1.S1_at--208--1071Chr07:18531175..18531199 (25 bp)
AGGGTCTCGCGGAATTCAACGCCAA
LOC_Os07g31300
Os.5814.1.S1_at--546--10751Chr07:18531148..18531172 (25 bp)
TTGGATCGGCCTCAACTGAACTGGA
LOC_Os07g31300
Os.5814.1.S1_at--335--6131Chr07:18531103..18531127 (25 bp)
GAGTGGATGTTCACAGTGCGCTCAA
LOC_Os07g31300
Os.5814.1.S1_at--899--9171Chr07:18531078..18531102 (25 bp)
TGCCGCTTTGGCTGGTTGATCAATA
LOC_Os07g31300
Os.5814.1.S1_at--676--9931Chr07:18531055..18531079 (25 bp)
TACGTTTTTAAGTTGCTGTCCCTCT
LOC_Os07g31300
Os.5814.1.S1_at--743--3651Chr07:18530912..18530936 (25 bp)
CTTCTTTTAACTTGACTCCTGCATG
LOC_Os07g31300
Os.5814.1.S1_at--81--11Chr07:18530868..18530892 (25 bp)
ATTTTTCTCCGAGCCTACAAAGTCG
LOC_Os07g31300
Target Sequence 
TCAGATGGGTGTTTTGCCAGGCCACGTTTCCACAATCGCAGAGCTCAAGCCTGGTGTTCTCTCGGTACACGAGGGAAACG
ATATCACCAAGTACTTTGTGAGCAGTGGCTTTGCATTTGTCCATGCAAANCTCCATCGCTGATATNGTGGCTGTTGAGGC
TGTCCCCCTGGACCAGATCGACCCAGCCGCGGTCCAGCAGGGTCTCGCGGAATTCAACGCCAAGCTTGGATCGGCCTCAA
CTGAACTGGAGAAGGCCGAAGCTCAGATTGGAGTGGATGTTCACAGTGCGCTCAATGCCGCTTTGGCTGGTTGATCAATA
CGTTTTTAAGTTGCTGTCCCTCTCTCTCTTTTGCATCTTCATTTTTAGAATGTGAGCTGAAGTTTGCAAACTCATGGATG
ATGGGATGGAGGGAATGATCTTAAATAAATTATACTCCATCTCAAAGACAGAACCCTGTTTCTTCTTTTAACTTGACTCC
TGCATGGATTTTTGTAATAGTGAATATTTTTCTCCGAGCCTACAAAGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5814.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis